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try testing viz again #550

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try testing viz again #550

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2 changes: 1 addition & 1 deletion tests/run_tests.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -40,7 +40,7 @@ echo "Running utils tests"
$PYCMD test_utils.py $@

# echo "Running viz tests"
# $PYCMD test_viz.py $@
$PYCMD test_viz.py $@

echo "Running bug tests"
$PYCMD test_bugs.py $@
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59 changes: 3 additions & 56 deletions tests/test_viz.py
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Original file line number Diff line number Diff line change
Expand Up @@ -16,59 +16,6 @@

import ants

class TestModule_surface(unittest.TestCase):

def setUp(self):
pass

def tearDown(self):
pass

def test_surf_example(self):
ch2i = ants.image_read( ants.get_ants_data("ch2") )
ch2seg = ants.threshold_image( ch2i, "Otsu", 3 )
wm = ants.threshold_image( ch2seg, 3, 3 )
wm2 = wm.smooth_image( 1 ).threshold_image( 0.5, 1e15 )
kimg = ants.weingarten_image_curvature( ch2i, 1.5 ).smooth_image( 1 )
wmz = wm2.iMath("MD",3)
rp = [(90,180,90), (90,180,270), (90,180,180)]
filename = mktemp(suffix='.png')
ants.surf( x=wm2, y=[kimg], z=[wmz],
inflation_factor=255, overlay_limits=(-0.3,0.3), verbose = True,
rotation_params = rp, filename=filename)

class TestModule_volume(unittest.TestCase):

def setUp(self):
pass

def tearDown(self):
pass

def test_vol_example(self):
ch2i = ants.image_read( ants.get_ants_data("mni") )
ch2seg = ants.threshold_image( ch2i, "Otsu", 3 )
wm = ants.threshold_image( ch2seg, 3, 3 )
kimg = ants.weingarten_image_curvature( ch2i, 1.5 ).smooth_image( 1 )
rp = [(90,180,90), (90,180,270), (90,180,180)]
filename = mktemp(suffix='.png')
result = ants.vol( wm, [kimg], quantlimits=(0.01,0.99), filename=filename)


class TestModule_render_surface_function(unittest.TestCase):

def setUp(self):
pass

def tearDown(self):
pass

def test_render_surface_function_example(self):
mni = ants.image_read(ants.get_ants_data('mni'))
mnia = ants.image_read(ants.get_ants_data('mnia'))
filename = mktemp(suffix='.html')
ants.render_surface_function(mni, mnia, alphasurf=0.1, auto_open=False, filename=filename)


class TestModule_plot(unittest.TestCase):

Expand All @@ -81,8 +28,9 @@ def tearDown(self):
pass

def test_plot_example(self):
filename = mktemp(suffix='.png')
for img in self.imgs:
ants.plot(img)
ants.plot(img, filename=filename)


class TestModule_create_tiled_mosaic(unittest.TestCase):
Expand All @@ -97,15 +45,14 @@ def tearDown(self):

def test_example(self):
img = ants.image_read(ants.get_ants_data('ch2')).resample_image((3,3,3))
p = ants.create_tiled_mosaic(img)

# test with output
outfile = mktemp(suffix='.png')
p = ants.create_tiled_mosaic(img, output=outfile)

# rgb is not none
rgb = img.clone()
p = ants.create_tiled_mosaic(img, rgb=rgb)
p = ants.create_tiled_mosaic(img, rgb=rgb, output=outfile)

if __name__ == '__main__':
run_tests()
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