Merge branch 'main' into simplify_low_mass_convective_star

.github/dependabot.yml

@@ -0,0 +1,13 @@
+# Dependabot configuration
+# ref: https://docs.github.com/en/code-security/supply-chain-security/keeping-your-dependencies-updated-automatically/configuration-options-for-dependency-updates
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "weekly"
+
+  - package-ecosystem: "pip"
+    directory: "/"
+    schedule:
+      interval: "weekly"

.github/workflows/codespell.yml

@@ -13,17 +13,17 @@ jobs:
     runs-on: ubuntu-latest
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 
       - name: Setup Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: '3.10'
 
       - name: Cache pip
-        uses: actions/cache@v3
+        uses: actions/cache@v4
         with:
           # this path is specific to Ubuntu
           path: ~/.cache/pip

.github/workflows/create_release.yml

@@ -12,7 +12,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout code
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Get the version
         id: get_version

.github/workflows/ecsn.yml

@@ -5,7 +5,7 @@ jobs:
   ecsn:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 
@@ -51,7 +51,7 @@ jobs:
       - name: Compare to stored output
         run: |
           cd ECSN
-          diff ECSN-ONe6040-final.hse.24414.06cm ci-benchmarks/ECSN-ONe6040-final.hse.24414.06cm
+          diff ECSN-ONe6040-final.hse.dx24414.06cm ci-benchmarks/ECSN-ONe6040-final.hse.dx24414.06cm
 
 
 

.github/workflows/gh-pages.yml

@@ -10,14 +10,14 @@ jobs:
   deploy:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - name: Install pandoc and doxygen
         run: |
           sudo apt install pandoc doxygen
 
       - name: Setup Python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v5
         with:
           python-version: '3.10'
 
@@ -31,7 +31,7 @@ jobs:
         run: echo "::set-output name=dir::$(pip cache dir)"
 
       - name: Cache dependencies
-        uses: actions/cache@v3
+        uses: actions/cache@v4
         with:
           path: ${{ steps.pip-cache.outputs.dir }}
           key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}
@@ -54,7 +54,7 @@ jobs:
         run: ./deploy_docs_action.sh
 
       - name: Deploy
-        uses: peaceiris/actions-gh-pages@v3
+        uses: peaceiris/actions-gh-pages@v4
         with:
           github_token: ${{ secrets.GITHUB_TOKEN }}
           publish_dir: ./out

.github/workflows/lagrangian_planar.yml

@@ -5,7 +5,7 @@ jobs:
   lagrangian_planar:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 
@@ -50,7 +50,7 @@ jobs:
       - name: Compare to stored output
         run: |
           cd lagrangian_planar
-          diff glasner_T7.hse.10000.00cm ci-benchmarks/glasner_T7.hse.10000.00cm
+          diff glasner_T7.hse.dx10000.00cm ci-benchmarks/glasner_T7.hse.dx10000.00cm
 
 
 

.github/workflows/low_mass_convective_star.yml

@@ -5,7 +5,7 @@ jobs:
   low_mass_convective_star:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 
@@ -50,7 +50,7 @@ jobs:
       - name: Compare to stored output
         run: |
           cd low_mass_convective_star
-          diff convective.hse.683.59km ci-benchmarks/convective.hse.683.59km
+          diff convective.hse.dx683.59km ci-benchmarks/convective.hse.dx683.59km
 
       - name: Run with irregular grid
         run: |

.github/workflows/massive_star.yml

@@ -5,7 +5,7 @@ jobs:
   massive_star:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 
@@ -45,12 +45,13 @@ jobs:
       - name: Run with regular grid
         run: |
           cd massive_star
-          ./initialmodel1d.gnu.ex inputs
+          ulimit -s 32768
+          ./initialmodel1d.gnu.ex inputs problem.nx=16384
 
       - name: Compare to stored output
         run: |
           cd massive_star
-          diff 15m_500_sec.aprox19.hse.20.00km ci-benchmarks/15m_500_sec.aprox19.hse.20.00km
+          diff 15m_500_sec.aprox19.hse.dx20.00km ci-benchmarks/15m_500_sec.aprox19.hse.dx20.00km
 
 
 

.github/workflows/spherical.yml

@@ -5,7 +5,7 @@ jobs:
   spherical:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 
@@ -50,7 +50,7 @@ jobs:
       - name: Compare to stored output
         run: |
           cd spherical
-          diff WD_rhoc_2.e9_M_1.1.hse.2.00km ci-benchmarks/WD_rhoc_2.e9_M_1.1.hse.2.00km
+          diff WD_rhoc_2.e9_M_1.1.hse.dx2.00km ci-benchmarks/WD_rhoc_2.e9_M_1.1.hse.dx2.00km
 
 
 

.github/workflows/sub_chandra.yml

@@ -5,7 +5,7 @@ jobs:
   sub_chandra:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 
@@ -50,7 +50,7 @@ jobs:
       - name: Compare to stored output
         run: |
           cd sub_chandra
-          diff sub_chandra.M_WD-1.10.M_He-0.050.delta50.00km.hse.CO.N14.10.00km ci-benchmarks/sub_chandra.M_WD-1.10.M_He-0.050.delta50.00km.hse.CO.N14.10.00km
+          diff sub_chandra.M_WD-1.10.M_He-0.050.delta50.00km.temp_base-1.75e+08.hse.CO.N14.dx10.00km ci-benchmarks/sub_chandra.M_WD-1.10.M_He-0.050.delta50.00km.hse.CO.N14.dx10.00km
 
 
 

.github/workflows/test2.yml

@@ -5,7 +5,7 @@ jobs:
   test2:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 
@@ -50,7 +50,7 @@ jobs:
       - name: Compare to stored output
         run: |
           cd test2
-          diff model.hse.5.62km ci-benchmarks/model.hse.5.62km
+          diff model.hse.dx5.62km ci-benchmarks/model.hse.dx5.62km
 
 
 

.github/workflows/toy_atm.yml

@@ -5,7 +5,7 @@ jobs:
   toy_atm:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 

.github/workflows/urca.yml

@@ -5,7 +5,7 @@ jobs:
   urca:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
         with:
           fetch-depth: 0
 

.gitignore

@@ -12,3 +12,5 @@ actual_network.F90
 build/
 
 tmp_build_dir
+
+nse*.tbl

ECSN/_parameters

@@ -1,7 +1,5 @@
 @namespace: problem
 
-model_file       character       "ECSN-ONe6040-final.raw"
-
 xmin             real            0.0
 
 xmax             real            2.5e8