Merge branch 'development' into cxx-hbflx3

AMReX-Astro · Oct 1, 2023 · 91321c9 · 91321c9
2 parents 5914ac8 + 59df5ae
commit 91321c9
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diff --git a/CHANGES.md b/CHANGES.md
@@ -1,3 +1,22 @@
+# 23.10
+
+  * True-SDC no longer evolves density as part of the reaction system
+    and now uses the same ODE code path as simplified-SDC.  This means
+    we don't need our own custom VODE righthand side functions (#2559,
+    #2560, #2567, #2578, #2580, #2584)
+
+  * The true SDC runtime parameter `sdc_solve_for_rhoe` has been
+    removed. (#2572)
+
+  * The true SDC runtime parameters `sdc_solver_tol_spec`,
+    `sdc_solver_tol_ener`, `sdc_solver_atol` have been removed.
+    Instead the Microphysics integration tolerance parameters should
+    be used. (#2571)
+
+  * The true SDC runtime parameter `sdc_newton_use_analytic_jac` has
+    been removed.  Instead the Microphysics integrator `jacobian`
+    parameter should be used (#2573)
+
 # 23.08
 
   * Time evolution without subcycling on the fine levels, which is enabled via
@@ -29,7 +48,7 @@
 # 23.06
 
   * The job_info file now reports the integrator used (#2463)
-  
+
   * 1-d cylindrical geometry was fixed (#2465, #2470)
 
 # 23.05

diff --git a/external/Microphysics b/external/Microphysics
diff --git a/external/amrex b/external/amrex
+33 −0		.codespell-ignore-words
+3 −0		.codespellrc
+2 −2		.github/workflows/cleanup-cache-postpr.yml
+2 −2		.github/workflows/cleanup-cache.yml
+23 −0		.github/workflows/codespell.yml
+5 −4		.github/workflows/cuda.yml
+40 −0		.github/workflows/dependencies/ubuntu_free_disk_space.sh
+1 −0		.github/workflows/intel.yml
+45 −0		CHANGES
+1 −1		CITATION
+1 −1		Docs/sphinx_documentation/source/AmrCore.rst
+6 −6		Docs/sphinx_documentation/source/GPU.rst
+1 −1		Docs/sphinx_documentation/source/InputsPlotFiles.rst
+1 −1		Docs/sphinx_documentation/source/LinearSolvers.rst
+2 −2		Docs/sphinx_documentation/source/Particle.rst
+2 −1		Src/Amr/AMReX_Amr.cpp
+3 −3		Src/AmrCore/AMReX_FillPatcher.H
+3 −3		Src/AmrCore/AMReX_FluxRegister.H
+3 −3		Src/Base/AMReX.cpp
+1 −1		Src/Base/AMReX_ANSIEscCode.H
+1 −1		Src/Base/AMReX_Arena.H
+1 −1		Src/Base/AMReX_BLProfiler.cpp
+1 −1		Src/Base/AMReX_CArena.H
+1 −1		Src/Base/AMReX_CTOParallelForImpl.H
+1 −1		Src/Base/AMReX_DistributionMapping.H
+3 −3		Src/Base/AMReX_FabArray.H
+30 −6		Src/Base/AMReX_FabArrayUtility.H
+1 −0		Src/Base/AMReX_GpuComplex.H
+2 −2		Src/Base/AMReX_GpuControl.H
+1 −1		Src/Base/AMReX_IntVect.H
+2 −1		Src/Base/AMReX_MultiFabUtil.cpp
+1 −1		Src/Base/AMReX_MultiFabUtilI.H
+1 −3		Src/Base/AMReX_NFiles.cpp
+1 −1		Src/Base/AMReX_PODVector.H
+9 −9		Src/Base/AMReX_ParReduce.H
+15 −0		Src/Base/AMReX_ParmParse.cpp
+7 −0		Src/Base/AMReX_Reduce.H
+1 −1		Src/Base/AMReX_Utility.cpp
+1 −1		Src/Base/AMReX_VisMF.H
+1 −1		Src/Boundary/AMReX_InterpBndryData.H
+1 −1		Src/Boundary/AMReX_YAFluxRegister.H
+1 −1		Src/EB/AMReX_EB2_GeometryShop.H
+3 −1		Src/EB/AMReX_EB2_Level.H
+1 −7		Src/EB/AMReX_EB2_Level.cpp
+5 −0		Src/EB/AMReX_EBCellFlag.H
+15 −0		Src/EB/AMReX_EBCellFlag.cpp
+3 −0		Src/EB/AMReX_EBDataCollection.H
+160 −1		Src/EB/AMReX_EBDataCollection.cpp
+10 −8		Src/EB/AMReX_EB_RedistributionApply.cpp
+1 −1		Src/EB/AMReX_EB_STL_utils.cpp
+41 −39		Src/EB/AMReX_EB_StateRedistUtils.cpp
+2 −2		Src/EB/AMReX_EB_utils.H
+5 −1		Src/Extern/Conduit/AMReX_Conduit_Blueprint.cpp
+5 −1		Src/Extern/Conduit/AMReX_Conduit_Blueprint_ParticlesI.H
+2 −2		Src/Extern/HDF5/AMReX_ParticlesHDF5.H
+52 −0		Src/Extern/HYPRE/AMReX_HypreSolver.H
+5 −5		Src/Extern/SENSEI/AMReX_AmrMeshDataAdaptor.cpp
+1 −1		Src/Extern/SENSEI/AMReX_AmrMeshParticleInSituBridge.H
+8 −8		Src/Extern/SENSEI/AMReX_ParticleDataAdaptorI.H
+133 −4		Src/Extern/SUNDIALS/AMReX_SundialsIntegrator.H
+1 −1		Src/Extern/SUNDIALS/AMReX_Sundials_Core.cpp
+41 −5		Src/F_Interfaces/AmrCore/AMReX_fillpatch_fi.cpp
+178 −32		Src/F_Interfaces/AmrCore/AMReX_fillpatch_mod.F90
+16 −0		Src/F_Interfaces/Base/AMReX_multifabutil_fi.cpp
+24 −1		Src/F_Interfaces/Base/AMReX_multifabutil_mod.F90
+4 −4		Src/LinearSolvers/MLMG/AMReX_MLLinOp.H
+2 −2		Src/LinearSolvers/MLMG/AMReX_MLNodeLaplacian.cpp
+6 −6		Src/Particle/AMReX_DenseBins.H
+1 −1		Src/Particle/AMReX_NeighborParticles.H
+6 −4		Src/Particle/AMReX_ParIter.H
+1 −1		Src/Particle/AMReX_ParticleCommunication.H
+5 −5		Src/Particle/AMReX_ParticleContainer.H
+24 −20		Src/Particle/AMReX_ParticleContainerI.H
+2 −2		Src/Particle/AMReX_ParticleInit.H
+10 −1		Src/Particle/AMReX_ParticleTile.H
+6 −10		Src/Particle/AMReX_ParticleUtil.H
+3 −3		Tests/FortranInterface/Advection_F/Source/my_amr_mod.F90
+3 −3		Tests/FortranInterface/Advection_octree_F/Source/my_amr_mod.F90
+2 −2		Tests/GPU/Vector/main.cpp
+1 −1		Tests/HDF5Benchmark/sz.config
+6 −6		Tests/LinearSolvers/Hypre/MyTest.cpp
+1 −1		Tests/Parser2/main.cpp
+1 −1		Tests/Particles/GhostsAndVirtuals/main.cpp
+1 −1		Tests/Particles/RedistributeSOA/main.cpp
+1 −1		Tests/Particles/SENSEI_Insitu_SOA/main.cpp
+1 −1		Tools/CMake/AMReXConfig.cmake.in
+1 −1		Tools/CMake/AMReXOptions.cmake
+2 −2		Tools/C_scripts/mmclt.py
+1 −1		Tools/GNUMake/Make.defs
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