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Warn if ASA is used in combination with events #2097

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merged 3 commits into from
May 26, 2023
Merged

Warn if ASA is used in combination with events #2097

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Warn if ASA is used in combination with events.
dweindl May 17, 2023
0c9f0ae
Merge branch 'develop' into warn_asa_events
FFroehlich May 26, 2023
3c94976
Apply suggestions from code review
dweindl May 26, 2023
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26 changes: 26 additions & 0 deletions python/sdist/amici/swig_wrappers.py
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Original file line number Diff line number Diff line change
@@ -1,6 +1,8 @@
"""Convenience wrappers for the swig interface"""
import logging
import sys

import warnings
from contextlib import contextmanager, suppress
from typing import Any, Dict, List, Optional, Sequence, Union

Expand Down Expand Up @@ -102,6 +104,18 @@ def runAmiciSimulation(
:returns:
ReturnData object with simulation results
"""
if (
model.ne > 0
and solver.getSensitivityMethod()
== amici_swig.SensitivityMethod.adjoint
and solver.getSensitivityOrder() == amici_swig.SensitivityOrder.first
):
warnings.warn(
"Adjoint sensitivity analysis for models with events with parameter-dependent trigger functions has not been thoroughly tested. "
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"Sensitivities might be wrong. Tracked at https://github.com/AMICI-dev/AMICI/issues/18. "
"If your model does not have parameter-dependent trigger functions, you can safely ignore this message."
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)

with _capture_cstdout():
rdata = amici_swig.runAmiciSimulation(
_get_ptr(solver), _get_ptr(edata), _get_ptr(model)
Expand Down Expand Up @@ -152,6 +166,18 @@ def runAmiciSimulations(

:returns: list of simulation results
"""
if (
model.ne > 0
and solver.getSensitivityMethod()
== amici_swig.SensitivityMethod.adjoint
and solver.getSensitivityOrder() == amici_swig.SensitivityOrder.first
):
warnings.warn(
"Adjoint sensitivity analysis for models with events with parameter-dependent trigger functions has not been thoroughly tested. "
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"Sensitivities might be wrong. Tracked at https://github.com/AMICI-dev/AMICI/issues/18. "
"If your model does not have parameter-dependent trigger functions, you can safely ignore this message."
dweindl marked this conversation as resolved.
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)

with _capture_cstdout():
edata_ptr_vector = amici_swig.ExpDataPtrVector(edata_list)
rdata_ptr_list = amici_swig.runAmiciSimulations(
Expand Down