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April 2024 updates #418

Merged
merged 40 commits into from
May 31, 2024
Merged

April 2024 updates #418

merged 40 commits into from
May 31, 2024

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keflavich
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First change: added a 'split' step for continuum cleaning

@keflavich keflavich merged commit 562cd94 into ACES-CMZ:main May 31, 2024
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keflavich added a commit to keflavich/reduction_ACES that referenced this pull request Jun 1, 2024
* add a split step for continuum cleaning (even though we've now imaged
95% of the data without taking this step...)

* remove split approach

* verboser text

* allow for target_line.ms to be in filenames but not exist

* pre-split continuum data

* fix up some critical bookkeeping

* missed import, more flexible retrieval script

* reduce requirements for installation so we can use ACES within CASA

* fix typos/errors

* dammit, I deleted a bunch of critical .ms files.

* more safety checks

* bump up cyclefactor for field aa

* pblimit for aa back to 0.1, plus extra logging commands

* add debug verbosity in imstats, which keeps "failing" when it succeeds, and switch pipeline to casa 6.5.4-9

* minor typo

* some mosaic stuff

* more sanity checks in make_mosaics and allow for another exception for field am in cleaning

* remove bad check

* mosaics need a relativethreshold

* fix manual cases

* pbcor things

* giant mosaics of feathered

* try to make mosaics work more...

* add a velocity of peak map.  Try forcing field aj to use original MSes

* whitespace

* revert aj ms selection: just changing to datacolumn=data worked, which doesn't make a whole lot of sense but 🤷

* fix undefined variable error

* add workaround for CI - raise an error at runtime if not in CASA environment

* revise mosaicing file finder

* try to make product-based images work again

* increase verbosity and add manual cubes to max/mom calculations

* p: use datacolumn=data

* ah, v, and l all need to switch to datacolumn='data' now too.

* force datacolumn='data' if that's specified in the tclean pars

* for field i, low-frequency, turn up cyclefactor and limit niter

* same thing for ag

* b was using contsubd data

* whitespace

* mosaicing & giant cube analysis updates

* mosaicing file path fixes, RMS folder choice, and attempt to fix analysis issue
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