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35254 Add Metagenomic Workflow #1473

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merged 7 commits into from
Dec 4, 2024
Merged

35254 Add Metagenomic Workflow #1473

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35254 Add Metagenomic Workflow
johnphan96 Nov 25, 2024
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35254 Add metagenomic workflow
johnphan96 Nov 27, 2024
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35254 Add Metagenomic workflow
johnphan96 Nov 28, 2024
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35254 Add metagenomic workflow
johnphan96 Nov 29, 2024
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35254 Add Metagenomics Workflow
johnphan96 Dec 2, 2024
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35254 Add Metagenomic workflow
johnphan96 Dec 3, 2024
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35254 Review
johnphan96 Dec 4, 2024
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4 changes: 2 additions & 2 deletions packages/common-ui/lib/api-client/useQuery.tsx
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Original file line number Diff line number Diff line change
Expand Up @@ -93,8 +93,6 @@ export function useQuery<TData extends KitsuResponseData, TMeta = undefined>(
);
}

await onSuccess?.(response);

if (joinSpecs) {
const { data } = response;
const resources = isArray(data) ? data : [data];
Expand All @@ -104,6 +102,8 @@ export function useQuery<TData extends KitsuResponseData, TMeta = undefined>(
}
}

await onSuccess?.(response);

return response;
}

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5 changes: 5 additions & 0 deletions packages/dina-ui/components/button-bar/nav/nav.tsx
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Expand Up @@ -380,6 +380,11 @@ function NavSequenceDropdown({ formatMessage }) {
<SeqdbMessage id="libraryPrepBatchListTitle" />
</NavDropdown.Item>
</Link>
<Link href="/seqdb/metagenomics-workflow/list" passHref={true}>
<NavDropdown.Item role="menuitem">
<SeqdbMessage id="metagenomicsWorkflowTitle" />
</NavDropdown.Item>
</Link>
<Link href="/seqdb/molecular-analysis-run/list" passHref={true}>
<NavDropdown.Item role="menuitem">
<SeqdbMessage id="molecularAnalysisRunListTitle" />
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4 changes: 4 additions & 0 deletions packages/dina-ui/components/collection/VocabularySelectField.tsx
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Expand Up @@ -6,13 +6,15 @@ import { useDinaIntl } from "../../intl/dina-ui-intl";
import useVocabularyOptions from "./useVocabularyOptions";
import { IdentifierType } from "packages/dina-ui/types/collection-api/resources/IdentifierType";
import { startCase } from "lodash";
import { boolean } from "zod";

export interface VocabularySelectFieldProps extends FieldWrapperProps {
path: string;
isMulti?: boolean;
selectProps?: Partial<
CreatableProps<VocabularyOption, true, GroupBase<VocabularyOption>>
>;
isDisabled?: boolean;
}

export interface VocabularyOption {
Expand All @@ -28,6 +30,7 @@ export function VocabularySelectField({
path,
selectProps,
isMulti,
isDisabled,
...labelWrapperProps
}: VocabularySelectFieldProps) {
const { formatMessage } = useDinaIntl();
Expand Down Expand Up @@ -60,6 +63,7 @@ export function VocabularySelectField({
return (
<div className={invalid ? "is-invalid" : ""}>
<CreatableSelect<VocabularyOption, boolean>
isDisabled={isDisabled}
isClearable={true}
options={vocabOptions}
isLoading={loading}
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