35423 Add Results tab to Generic Molecular Analysis #7989
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| name: Java CI | |
| on: [push] | |
| jobs: | |
| setup: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| test-chunks: ${{ steps['set-test-chunks'].outputs['test-chunks'] }} | |
| test-chunk-ids: ${{ steps['set-test-chunk-ids'].outputs['test-chunk-ids'] }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-node@v3 | |
| with: | |
| node-version: '18' | |
| cache: 'yarn' | |
| - run: yarn install | |
| # Steps being performed here: | |
| # npx jest --listTests: List all of the available tests. | |
| # shuf: Shuffle the list randomly. | |
| # awk NF: Remove additional empty lines. | |
| # jq -R .: Convert each line to a JSON string. | |
| # jq -s .: Combine them all into a single JSON array. | |
| # jq -cM ...: This part will split it into 8 groups. The last group will probably not have enough to fill the full group. | |
| - id: set-test-chunks | |
| name: split tests into chunks | |
| run: echo "test-chunks=$(npx jest --listTests | shuf | awk NF | jq -R . | jq -s . | jq -cM '[_nwise(length / 7 | floor)]')" >> $GITHUB_OUTPUT | |
| - id: set-test-chunk-ids | |
| name: Set Chunk IDs | |
| run: echo "test-chunk-ids=$(echo $CHUNKS | jq -cM 'to_entries | map(.key)')" >> $GITHUB_OUTPUT | |
| env: | |
| CHUNKS: ${{ steps['set-test-chunks'].outputs['test-chunks'] }} | |
| test-chunk: | |
| runs-on: ubuntu-latest | |
| name: run tests (Chunk ${{ matrix.chunk }}) | |
| needs: | |
| - setup | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| chunk: ${{ fromJson(needs.setup.outputs['test-chunk-ids']) }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-node@v3 | |
| with: | |
| node-version: '18' | |
| cache: 'yarn' | |
| - run: yarn install | |
| - name: Run all tests in chunk | |
| run: echo $CHUNKS | jq '.[${{ matrix.chunk }}] | .[] | @text' | xargs npx jest | |
| env: | |
| CHUNKS: ${{ needs.setup.outputs['test-chunks'] }} | |
| build: | |
| runs-on: ubuntu-latest | |
| needs: | |
| - setup | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-node@v3 | |
| with: | |
| node-version: '18' | |
| cache: 'yarn' | |
| - name: Install | |
| run: | | |
| yarn install | |
| - name: Build UI project | |
| run: | | |
| yarn workspace dina-ui build | |
| - name: Extract Version | |
| if: ${{ github.ref == 'refs/heads/master' }} | |
| run: | | |
| jq -r ".version" packages/dina-ui/package.json > version.txt | |
| - name: Store artifacts | |
| if: ${{ github.ref == 'refs/heads/master' }} | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: build-artifacts | |
| path: | | |
| packages/dina-ui/prod.Caddyfile | |
| packages/dina-ui/out | |
| Dockerfile | |
| version.txt | |
| push: | |
| name: Build Docker Image and Push to DockerHub | |
| needs: [build] | |
| runs-on: ubuntu-latest | |
| if: ${{ github.ref == 'refs/heads/master' }} | |
| steps: | |
| - name: Download artifacts from build job | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: build-artifacts | |
| - name: Set VERSION_TAG ENV variable | |
| run: | | |
| echo "VERSION_TAG=$(cat version.txt)" >> $GITHUB_ENV | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v2 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_TOKEN }} | |
| - name: Build Image and Push | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: . | |
| push: true | |
| tags: aafcbicoe/dina-ui:${{ env.VERSION_TAG }} | |
| provenance: false | |
| build-docs: | |
| runs-on: ubuntu-latest | |
| if: ${{ github.ref == 'refs/heads/master' }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-node@v3 | |
| with: | |
| node-version: '18' | |
| - name: Building ascii docs | |
| run: | | |
| yarn install | |
| yarn docs | |
| - name: Copy images for UI dev docs | |
| run: | | |
| mkdir generated-docs/images | |
| cp -r ./docs/images generated-docs | |
| - name: Deploy GitHub Pages (only on master branch) | |
| uses: peaceiris/actions-gh-pages@v3 | |
| with: | |
| github_token: ${{ secrets.GITHUB_TOKEN }} | |
| publish_dir: generated-docs | |