DESCRIPTION

Package: QuasR
Type: Package
Title: Quantify and Annotate Short Reads in R
Version: 1.11.0
Date: 2015-09-21
Author: Anita Lerch, Dimos Gaiditzis and Michael Stadler
Maintainer: Michael Stadler <michael.stadler@fmi.ch>
Depends: parallel, GenomicRanges (>= 1.13.3), Rbowtie
Imports: methods, zlibbioc, BiocGenerics, S4Vectors, IRanges, BiocInstaller,
        Biobase, Biostrings, BSgenome, Rsamtools (>= 1.19.38),
        GenomicFeatures (>= 1.17.13), ShortRead (>= 1.19.1),
        GenomicAlignments, BiocParallel, GenomeInfoDb,
	rtracklayer, GenomicFiles
Suggests: Gviz, RUnit, BiocStyle
LinkingTo: Rsamtools
Description: This package provides a framework for the quantification
        and analysis of Short Reads. It covers a complete workflow
        starting from raw sequence reads, over creation of alignments
        and quality control plots, to the quantification of genomic
        regions of interest.
License: GPL-2
biocViews: Genetics, Preprocessing, Sequencing, ChIPSeq, RNASeq,
        MethylSeq, Coverage, Alignment, QualityControl
Archs: x64