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title = {Palaeohydraulics revisited: palaeoslope estimation in coarse-grained braided rivers},
volume = {8},
issn = {0950-091X, 1365-2117},
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doi = {10.1046/j.1365-2117.1996.00253.x},
language = {en},
number = {3},
urldate = {2024-12-16},
journal = {Basin Research},
author = {Paola, Chris and Mohrig, David},
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year = {1996},
pages = {243--254},
}
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doi = {10.1144/GSL.SP.2004.232.01.08},
language = {en},
number = {1},
urldate = {2024-12-16},
journal = {Geological Society, London, Special Publications},
author = {Blott, Simon J. and Croft, Debra J. and Pye, Kenneth and Saye, Samantha E. and Wilson, Helen E.},
month = jan,
year = {2004},
pages = {63--73},
}
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title = {Transferable wavelet method for grain-size distribution from images of sediment surfaces and thin sections, and other natural granular patterns},
volume = {60},
issn = {0037-0746, 1365-3091},
url = {https://onlinelibrary.wiley.com/doi/10.1111/sed.12049},
doi = {10.1111/sed.12049},
language = {en},
number = {7},
urldate = {2024-12-16},
journal = {Sedimentology},
author = {Buscombe, Daniel},
month = dec,
year = {2013},
pages = {1709--1732},
}
@article{Buscombe:2020,
title = {SediNet: a configurable deep learning model for mixed qualitative and quantitative optical granulometry},
volume = {45},
issn = {0197-9337, 1096-9837},
shorttitle = {{SediNet}},
url = {https://onlinelibrary.wiley.com/doi/10.1002/esp.4760},
doi = {10.1002/esp.4760},
language = {en},
number = {3},
urldate = {2024-12-16},
journal = {Earth Surface Processes and Landforms},
author = {Buscombe, Daniel},
month = mar,
year = {2020},
pages = {638--651},
}
@article{Chen:2023,
title = {Quantifying and analysing rock trait distributions of rocky fault scarps using deep learning},
volume = {48},
issn = {0197-9337, 1096-9837},
url = {https://onlinelibrary.wiley.com/doi/10.1002/esp.5545},
doi = {10.1002/esp.5545},
language = {en},
number = {6},
urldate = {2024-12-16},
journal = {Earth Surface Processes and Landforms},
author = {Chen, Zhiang and Scott, Chelsea and Keating, Devin and Clarke, Amanda and Das, Jnaneshwar and Arrowsmith, Ramon},
month = may,
year = {2023},
pages = {1234--1250},
}
@article{Parker:2007,
title = {Physical basis for quasi-universal relations describing bankfull hydraulic geometry of single‐thread gravel bed rivers},
volume = {112},
copyright = {http://onlinelibrary.wiley.com/termsAndConditions\#vor},
issn = {0148-0227},
url = {https://agupubs.onlinelibrary.wiley.com/doi/10.1029/2006JF000549},
doi = {10.1029/2006JF000549},
language = {en},
number = {F4},
urldate = {2024-12-16},
journal = {Journal of Geophysical Research: Earth Surface},
author = {Parker, Gary and Wilcock, Peter R. and Paola, Chris and Dietrich, William E. and Pitlick, John},
month = dec,
year = {2007},
pages = {2006JF000549},
}
@article{Kirillov:2023,
title = {Segment Anything},
url = {http://arxiv.org/abs/2304.02643},
doi = {10.48550/arXiv.2304.02643},
language = {en},
urldate = {2024-12-16},
publisher = {arXiv},
author = {Kirillov, Alexander and Mintun, Eric and Ravi, Nikhila and Mao, Hanzi and Rolland, Chloe and Gustafson, Laura and Xiao, Tete and Whitehead, Spencer and Berg, Alexander C. and Lo, Wan-Yen and Dollár, Piotr and Girshick, Ross},
month = apr,
year = {2023},
note = {arXiv:2304.02643 [cs]},
keywords = {Computer Science - Machine Learning, Computer Science - Computer Vision and Pattern Recognition, Computer Science - Artificial Intelligence},
}
@article{Mair:2022,
title = {Grain size of fluvial gravel bars from close-range {UAV} imagery - uncertainty in segmentation-based data},
volume = {10},
copyright = {https://creativecommons.org/licenses/by/4.0/},
issn = {2196-632X},
url = {https://esurf.copernicus.org/articles/10/953/2022/},
doi = {10.5194/esurf-10-953-2022},
language = {en},
number = {5},
urldate = {2024-12-16},
journal = {Earth Surface Dynamics},
author = {Mair, David and Do Prado, Ariel Henrique and Garefalakis, Philippos and Lechmann, Alessandro and Whittaker, Alexander and Schlunegger, Fritz},
month = oct,
year = {2022},
pages = {953--973},
}
@article{Pielawski:2020,
title = {Introducing {Hann} windows for reducing edge-effects in patch-based image segmentation},
volume = {15},
issn = {1932-6203},
url = {https://dx.plos.org/10.1371/journal.pone.0229839},
doi = {10.1371/journal.pone.0229839},
language = {en},
number = {3},
urldate = {2024-12-16},
journal = {PLOS ONE},
author = {Pielawski, Nicolas and Wählby, Carolina},
editor = {Zhang, Jie},
month = mar,
year = {2020},
pages = {e0229839},
}
@article{Purinton:2021,
title = {Tracking Downstream Variability in Large Grain-Size Distributions in the South-Central Andes},
volume = {126},
issn = {2169-9003, 2169-9011},
url = {https://agupubs.onlinelibrary.wiley.com/doi/10.1029/2021JF006260},
doi = {10.1029/2021JF006260},
language = {en},
number = {8},
urldate = {2024-12-16},
journal = {Journal of Geophysical Research: Earth Surface},
author = {Purinton, Benjamin and Bookhagen, Bodo},
month = aug,
year = {2021},
pages = {e2021JF006260},
}
@article{Reynolds:2024,
title = {Grain size from source to sink - modern and ancient fining rates},
volume = {250},
issn = {00128252},
url = {https://linkinghub.elsevier.com/retrieve/pii/S0012825224000266},
doi = {10.1016/j.earscirev.2024.104699},
language = {en},
urldate = {2024-12-16},
journal = {Earth-Science Reviews},
author = {Reynolds, Tony},
month = mar,
year = {2024},
pages = {104699},
}
@article{Buscombe:2009,
title = {Grain-size information from the statistical properties of digital images of sediment},
volume = {56},
issn = {0037-0746, 1365-3091},
url = {https://onlinelibrary.wiley.com/doi/10.1111/j.1365-3091.2008.00977.x},
doi = {10.1111/j.1365-3091.2008.00977.x},
language = {en},
number = {2},
urldate = {2024-12-16},
journal = {Sedimentology},
author = {Buscombe, Daniel and Masselink, Gerhard},
month = feb,
year = {2009},
pages = {421--438},
}
@article{Tang:2020,
title = {Machine learning for point counting and segmentation of arenite in thin section},
volume = {120},
issn = {02648172},
url = {https://linkinghub.elsevier.com/retrieve/pii/S0264817220303019},
doi = {10.1016/j.marpetgeo.2020.104518},
language = {en},
urldate = {2024-12-16},
journal = {Marine and Petroleum Geology},
author = {Tang, David G. and Milliken, Kitty L. and Spikes, Kyle T.},
month = oct,
year = {2020},
pages = {104518},
}
@article{Warrick:2009,
title = {Cobble cam: grain-size measurements of sand to boulder from digital photographs and autocorrelation analyses},
volume = {34},
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issn = {0197-9337, 1096-9837},
shorttitle = {Cobble cam},
url = {https://onlinelibrary.wiley.com/doi/10.1002/esp.1877},
doi = {10.1002/esp.1877},
language = {en},
number = {13},
urldate = {2024-12-16},
journal = {Earth Surface Processes and Landforms},
author = {Warrick, Jonathan A. and Rubin, David M. and Ruggiero, Peter and Harney, Jodi N. and Draut, Amy E. and Buscombe, Daniel},
month = oct,
year = {2009},
pages = {1811--1821},
}
@article{Mair:2024,
title = {Automated detecting, segmenting and measuring of grains in images of fluvial sediments: {The} potential for large and precise data from specialist deep learning models and transfer learning},
volume = {49},
issn = {0197-9337, 1096-9837},
shorttitle = {Automated detecting, segmenting and measuring of grains in images of fluvial sediments},
url = {https://onlinelibrary.wiley.com/doi/10.1002/esp.5755},
doi = {10.1002/esp.5755},
language = {en},
number = {3},
urldate = {2024-12-18},
journal = {Earth Surface Processes and Landforms},
author = {Mair, David and Witz, Guillaume and Do Prado, Ariel Henrique and Garefalakis, Philippos and Schlunegger, Fritz},
month = mar,
year = {2024},
pages = {1099--1116},
}
@article{Dunne:2018,
title = {Evidence of, and a proposed explanation for, bimodal transport states in alluvial rivers},
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copyright = {https://creativecommons.org/licenses/by/4.0/},
issn = {2196-632X},
url = {https://esurf.copernicus.org/articles/6/583/2018/},
doi = {10.5194/esurf-6-583-2018},
language = {en},
number = {3},
urldate = {2024-12-18},
journal = {Earth Surface Dynamics},
author = {Dunne, Kieran B. J. and Jerolmack, Douglas J.},
month = jul,
year = {2018},
pages = {583--594},
}
@article{Piegay:2020,
title = {Remotely sensed rivers in the {Anthropocene}: state of the art and prospects},
volume = {45},
issn = {0197-9337, 1096-9837},
shorttitle = {Remotely sensed rivers in the {Anthropocene}},
url = {https://onlinelibrary.wiley.com/doi/10.1002/esp.4787},
doi = {10.1002/esp.4787},
language = {en},
number = {1},
urldate = {2024-12-18},
journal = {Earth Surface Processes and Landforms},
author = {Piégay, Hervé and Arnaud, Fanny and Belletti, Barbara and Bertrand, Mélanie and Bizzi, Simone and Carbonneau, Patrice and Dufour, Simon and Liébault, Frédéric and Ruiz‐Villanueva, Virginia and Slater, Louise},
month = jan,
year = {2020},
pages = {157--188},
}
@article{Azzam:2024,
title = {Automated petrographic image analysis by supervised and unsupervised machine learning methods},
volume = {2},
copyright = {https://creativecommons.org/licenses/by/4.0},
issn = {2813-415X},
url = {https://oap.unige.ch/journals/sdk/article/view/1594},
doi = {10.57035/journals/sdk.2024.e22.1594},
language = {en},
number = {2},
urldate = {2024-12-18},
journal = {Sedimentologika},
author = {Azzam, Fares and Blaise, Thomas and Brigaud, Benjamin},
month = nov,
year = {2024},
}
@article{Robin:2024,
title = {Mechanical properties of rubble pile asteroids ({Dimorphos}, {Itokawa}, {Ryugu}, and {Bennu}) through surface boulder morphological analysis},
volume = {15},
issn = {2041-1723},
url = {https://www.nature.com/articles/s41467-024-50147-w},
doi = {10.1038/s41467-024-50147-w},
language = {en},
number = {1},
urldate = {2024-12-18},
journal = {Nature Communications},
author = {Robin, Colas Q. and Duchene, Alexia and Murdoch, Naomi and Vincent, Jean-Baptiste and Lucchetti, Alice and Pajola, Maurizio and Ernst, Carolyn M. and Daly, R. Terik and Barnouin, Olivier S. and Raducan, Sabina D. and Michel, Patrick and Hirabayashi, Masatochi and Stott, Alexander and Cuervo, Gabriela and Jawin, Erica R. and Trigo-Rodriguez, Josep M. and Parro, Laura M. and Sunday, Cecily and Vivet, Damien and Mimoun, David and Rivkin, Andrew S. and Chabot, Nancy L.},
month = jul,
year = {2024},
pages = {6203},
}
@mastersthesis{Roberts:2024,
title = {Evaluation of 3d beach profiles: A new method for monitoring changes in beach morphology and grain size},
author = {Roberts, Kalinda},
school = {University of Massachusetts Boston},
year = {2024},
type = {MS Thesis},
}
@article{Prieur:2023,
title = {Automatic Characterization of Boulders on Planetary Surfaces From High-Resolution Satellite Images},
volume = {128},
issn = {2169-9097, 2169-9100},
url = {https://agupubs.onlinelibrary.wiley.com/doi/10.1029/2023JE008013},
doi = {10.1029/2023JE008013},
language = {en},
number = {11},
urldate = {2024-12-18},
journal = {Journal of Geophysical Research: Planets},
author = {Prieur, Nils C. and Amaro, Brian and Gonzalez, Emiliano and Kerner, Hannah and Medvedev, Sergei and Rubanenko, Lior and Werner, Stephanie C. and Xiao, Zhiyong and Zastrozhnov, Dmitry and Lapôtre, Mathieu G. A.},
month = nov,
year = {2023},
pages = {e2023JE008013},
}
@misc{Ronneberger:2015,
title = {U-Net: Convolutional Networks for Biomedical Image Segmentation},
shorttitle = {U-{Net}},
url = {http://arxiv.org/abs/1505.04597},
doi = {10.48550/arXiv.1505.04597},
language = {en},
urldate = {2024-12-16},
publisher = {arXiv},
author = {Ronneberger, Olaf and Fischer, Philipp and Brox, Thomas},
month = may,
year = {2015},
note = {arXiv:1505.04597 [cs]},
keywords = {Computer Science - Computer Vision and Pattern Recognition},
}
@misc{Ravi:2024,
title = {SAM 2: Segment Anything in Images and Videos},
shorttitle = {{SAM} 2},
url = {http://arxiv.org/abs/2408.00714},
doi = {10.48550/arXiv.2408.00714},
language = {en},
urldate = {2024-12-18},
publisher = {arXiv},
author = {Ravi, Nikhila and Gabeur, Valentin and Hu, Yuan-Ting and Hu, Ronghang and Ryali, Chaitanya and Ma, Tengyu and Khedr, Haitham and Rädle, Roman and Rolland, Chloe and Gustafson, Laura and Mintun, Eric and Pan, Junting and Alwala, Kalyan Vasudev and Carion, Nicolas and Wu, Chao-Yuan and Girshick, Ross and Dollár, Piotr and Feichtenhofer, Christoph},
month = oct,
year = {2024},
note = {arXiv:2408.00714 [cs]},
keywords = {Computer Science - Machine Learning, Computer Science - Computer Vision and Pattern Recognition, Computer Science - Artificial Intelligence},
}
@article{Stringer:2021,
title = {Cellpose: a generalist algorithm for cellular segmentation},
volume = {18},
issn = {1548-7091, 1548-7105},
shorttitle = {Cellpose},
url = {https://www.nature.com/articles/s41592-020-01018-x},
doi = {10.1038/s41592-020-01018-x},
language = {en},
number = {1},
urldate = {2024-12-18},
journal = {Nature Methods},
author = {Stringer, Carsen and Wang, Tim and Michaelos, Michalis and Pachitariu, Marius},
month = jan,
year = {2021},
pages = {100--106},
}
@misc{Clark:2015,
title={Pillow (PIL Fork) Documentation},
author={Clark, Alex},
year={2015},
publisher={readthedocs},
url={https://pillow.readthedocs.io/en/stable/index.html}
}
@article{Van_der_Walt:2014,
title = {scikit-image: image processing in {Python}},
volume = {2},
issn = {2167-8359},
shorttitle = {scikit-image},
url = {https://peerj.com/articles/453},
doi = {10.7717/peerj.453},
language = {en},
urldate = {2024-12-16},
journal = {PeerJ},
author = {Van Der Walt, Stéfan and Schönberger, Johannes L. and Nunez-Iglesias, Juan and Boulogne, François and Warner, Joshua D. and Yager, Neil and Gouillart, Emmanuelle and Yu, Tony},
month = jun,
year = {2014},
pages = {e453},
}
@software{Gillies:2019,
author = {Sean Gillies and others},
organization = {Mapbox},
title = {Rasterio: geospatial raster I/O for {Python} programmers},
year = {2013--},
url = "https://github.com/rasterio/rasterio"
}
@Misc{Gillies:2007,
author = {Sean Gillies and others},
organization = {toblerity.org},
title = {Shapely: manipulation and analysis of geometric objects},
year = {2007--},
url = "https://github.com/Toblerity/Shapely"
}
@inproceedings{Hagberg:2008,
address = {Pasadena, California},
title = {Exploring Network Structure, Dynamics, and Function using NetworkX},
copyright = {https://creativecommons.org/licenses/by/3.0/},
url = {https://doi.curvenote.com/10.25080/TCWV9851},
doi = {10.25080/TCWV9851},
abstract = {NetworkX is a Python language package for exploration and analysis of networks and network algorithms. The core package provides data structures for representing many types of networks, or graphs, including simple graphs, directed graphs, and graphs with parallel edges and self-loops. The nodes in NetworkX graphs can be any (hashable) Python object and edges can contain arbitrary data; this flexibility makes NetworkX ideal for representing networks found in many different scientific fields. In addition to the basic data structures many graph algorithms are implemented for calculating network properties and structure measures: shortest paths, betweenness centrality, clustering, and degree distribution and many more. NetworkX can read and write various graph formats for easy exchange with existing data, and provides generators for many classic graphs and popular graph models, such as the Erdos-Renyi, Small World, and Barabasi-Albert models. The ease-of-use and flexibility of the Python programming language together with connection to the SciPy tools make NetworkX a powerful tool for scientific computations. We discuss some of our recent work studying synchronization of coupled oscillators to demonstrate how NetworkX enables research in the field of computational networks.},
language = {en},
urldate = {2024-12-16},
author = {Hagberg, Aric A. and Schult, Daniel A. and Swart, Pieter J.},
month = jun,
year = {2008},
pages = {11--15},
}
@misc{Abadi:2015,
title={ {TensorFlow}: Large-Scale Machine Learning on Heterogeneous Systems},
url={https://www.tensorflow.org/},
note={Software available from tensorflow.org},
author={
Mart\'{i}n~Abadi and
Ashish~Agarwal and
Paul~Barham and
Eugene~Brevdo and
Zhifeng~Chen and
Craig~Citro and
Greg~S.~Corrado and
Andy~Davis and
Jeffrey~Dean and
Matthieu~Devin and
Sanjay~Ghemawat and
Ian~Goodfellow and
Andrew~Harp and
Geoffrey~Irving and
Michael~Isard and
Yangqing Jia and
Rafal~Jozefowicz and
Lukasz~Kaiser and
Manjunath~Kudlur and
Josh~Levenberg and
Dandelion~Man\'{e} and
Rajat~Monga and
Sherry~Moore and
Derek~Murray and
Chris~Olah and
Mike~Schuster and
Jonathon~Shlens and
Benoit~Steiner and
Ilya~Sutskever and
Kunal~Talwar and
Paul~Tucker and
Vincent~Vanhoucke and
Vijay~Vasudevan and
Fernanda~Vi\'{e}gas and
Oriol~Vinyals and
Pete~Warden and
Martin~Wattenberg and
Martin~Wicke and
Yuan~Yu and
Xiaoqiang~Zheng},
year={2015},
}
@misc{Chollet:2015,
title={Keras},
author={Chollet, Fran\c{c}ois and others},
year={2015},
howpublished={\url{https://keras.io}},
}
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title={Scikit-learn: Machine Learning in {P}ython},
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and Thirion, B. and Grisel, O. and Blondel, M. and Prettenhofer, P.
and Weiss, R. and Dubourg, V. and Vanderplas, J. and Passos, A. and
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@incollection{Taylor:2022,
title = {Chapter 6: Quantitative Textural Analysis},
isbn = {978-1-56576-374-6 978-1-56576-375-3},
shorttitle = {Chapter 6},
url = {https://pubs.geoscienceworld.org/sepm/books/monograph/2359/chapter/133729738/Chapter-6-Quantitative-Textural-Analysis},
language = {en},
urldate = {2024-12-16},
booktitle = {Sandstone {Petrography}, {Petrology}, and {Modeling}},
publisher = {SEPM Society for Sedimentary Geology},
collaborator = {Taylor, Thomas R. and Lander, Robert H. and Bonnell, Linda M.},
month = may,
year = {2022},
doi = {10.2110/sepmcsp.13.06},
pages = {143--160},
}
@misc{Prodanovic:2019,
author = {Prodanovic, Masa and Milliken, Kitty L. and Mehmani, Ayaz},
title = {Offshore Miocene sandstone thin section (Folk McBride Collection)},
year = {2019},
publisher = {Digital Rocks Portal},
doi = {10.17612/rn6g-fq64},
howpublished = {\url{https://www.digitalrocksportal.org/projects/244}}
}