From 231f78992cfdbe97cb6b4f385bac5309ebfe5a5e Mon Sep 17 00:00:00 2001 From: Joshua Allen Date: Fri, 5 Feb 2021 20:00:28 -0600 Subject: [PATCH] Update ChangeLog.md --- ChangeLog.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/ChangeLog.md b/ChangeLog.md index bc48ba7..6caaed0 100644 --- a/ChangeLog.md +++ b/ChangeLog.md @@ -1,4 +1,4 @@ -#NEAT v3.0 +# NEAT v3.0 - NEAT gen_reads now runs in Python 3 exclusively. The previous, Python 2 version is stored in the repo as v2.0, but will not be undergoing active development. - Converted sequence objects to Biopython Sequence objects to take advantage of the Biopython library - Converted cigar strings to lists. Now there are simply a functions that convert a generic cigar string to a list and vice versa. @@ -7,7 +7,7 @@ - Added a basic bacterial wrapper that will simulate multiple generations of bacteria based on an input fasta, mutate them and then produce the fastqs, bams, and vcfs for the resultant bacterial population. -##TODOs for v3.1 +## TODOs for v3.1 NEAT is still undergoing active development with many exciting upgrades planned. We also plan to bring the code up to full production scale and will continue to improve the following features (if you would like to [Contribute](CONTRIBUTING.md)) - Using Python's multithreading libraries, speed up NEAT's gen_reads tool significantly. - Take advantage of pandas library for reading in bed files and other files.