docs: describe ZARP outputs and how to use/explore them

[uniqueg]

Is your feature request related to a problem? Please describe.

Currently, there is no documentation that describes the invidiual outputs that ZARP generates and how users can explore them and use them in downstream analyses.

Describe the solution you'd like

Add a section to the README.md that describes the workflow outputs.

Describe alternatives you've considered

N/A

Additional context

N/A

[mkatsanto]

• Add documentation on how to find and update tool resources (and profiles)
• add the version update steps for containers in documention
• explain rule_config and how to use it
• provide a detailed table including minimum specifications, recommended configurations, and installation guidelines for different environments to improve user-friendliness
• installation process
• potential pitfalls, troubleshooting tips
• Table listing the tools and their versions, specific tasks each tool performs, dependencies
• more example codes, such as the installation of ZARP and each subsequent step of operation
• How to add or modify profiles
• Installation for mac users (only linux env for now)
• customised containers
• How to contribute

[fgypas]

• Create your own version of a tool
• Fix execution with docker section in Usage page