diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 4dbe371..eb08a96 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -17,7 +17,7 @@ jobs: shell: bash -l {0} steps: - - name: check out repository + - name: Check out repository uses: actions/checkout@v4 - name: Setup Conda/Mamba @@ -32,7 +32,7 @@ jobs: - name: Update scrnasim env with dev packages run: mamba env update -n scrnasim -f environment-dev.yml - - name: display environment info + - name: Display environment info run: | conda info -a conda list @@ -54,10 +54,10 @@ jobs: steps: - - name: checkout repository + - name: Checkout repository uses: actions/checkout@v4 - - name: setup Conda/Mamba + - name: Setup Conda/Mamba uses: conda-incubator/setup-miniconda@v2 with: mamba-version: "*" @@ -66,20 +66,20 @@ jobs: environment-file: environment.yml auto-activate-base: false - - name: update scrnasim env with dev packages + - name: Update scrnasim env with dev packages run: mamba env update -n scrnasim -f environment-dev.yml - - name: display environment info + - name: Display environment info run: | conda info -a conda list - - name: run unit tests + - name: Run unit tests run: | coverage run --source scRNAsim_toolz -m pytest coverage xml - - name: submit coverage report + - name: Submit coverage report uses: codecov/codecov-action@v2 with: token: ${{ secrets.CODECOV_TOKEN }} @@ -96,14 +96,14 @@ jobs: steps: - - name: check out repository + - name: Check out repository uses: actions/checkout@v4 - - name: generate tag + - name: Generate tag run: | echo "TAG=$(date '+%Y%m%d')" >> $GITHUB_ENV - - name: build and publish image + - name: Build and publish image id: docker uses: philips-software/docker-ci-scripts@v5.1.0 with: