diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 22c59e57..2c0e7bad 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -12,21 +12,18 @@ jobs: steps: - name: check out repository - uses: actions/checkout@v3 + uses: actions/checkout@v4 - name: set up miniconda and env uses: conda-incubator/setup-miniconda@v2 with: - auto-update-conda: true + python-version: "3.9" mamba-version: "*" - channels: conda-forge,defaults - environment-file: environment.yml + auto-update-conda: true activate-environment: htsinfer + environment-file: environment-dev.yml auto-activate-base: false - - name: update env with dev packages - run: mamba env update --file environment-dev.yml - - name: display env info run: | conda info -a @@ -63,16 +60,12 @@ jobs: uses: conda-incubator/setup-miniconda@v2 with: python-version: ${{ matrix.python-version }} - auto-update-conda: true mamba-version: "*" - channels: conda-forge,defaults - environment-file: environment.yml + auto-update-conda: true activate-environment: htsinfer + environment-file: environment-dev.yml auto-activate-base: false - - name: update env with dev packages - run: mamba env update --file environment-dev.yml - - name: display env info run: | conda info -a @@ -107,22 +100,18 @@ jobs: steps: - name: check out repository - uses: actions/checkout@v3 + uses: actions/checkout@v4 - name: set up miniconda and env uses: conda-incubator/setup-miniconda@v2 with: python-version: ${{ matrix.python-version }} - auto-update-conda: true mamba-version: "*" - channels: conda-forge,defaults - environment-file: environment.yml + auto-update-conda: true activate-environment: htsinfer + environment-file: environment-dev.yml auto-activate-base: false - - name: update env with dev packages - run: mamba env update --file environment-dev.yml - - name: display env info run: | conda info -a @@ -171,4 +160,4 @@ jobs: run: | echo "Push indicator: ${{ steps.docker.outputs.push-indicator }}" echo "# Set to 'true' if image was pushed, empty string otherwise" - test "${{ steps.docker.outputs.push-indicator }}" == "true" \ No newline at end of file + test "${{ steps.docker.outputs.push-indicator }}" == "true"