From 8ddb254fe4760a59ec8ec89872167494df74e8d9 Mon Sep 17 00:00:00 2001 From: Alex Kanitz Date: Mon, 11 Sep 2023 13:43:20 +0200 Subject: [PATCH] channel order --- environment-dev.yml | 29 ++++++++++++++--------------- environment.yml | 19 +++++++++---------- 2 files changed, 23 insertions(+), 25 deletions(-) diff --git a/environment-dev.yml b/environment-dev.yml index fffa1c69..40f4f5f4 100644 --- a/environment-dev.yml +++ b/environment-dev.yml @@ -1,25 +1,24 @@ name: htsinfer channels: - - defaults - conda-forge - bioconda dependencies: - - biopython>=1.78 - - coverage>=5.3 - - cutadapt>=3.5, <=4.2 - - flake8>=3.8.4 - - kallisto>=0.46.1, <= 0.48.0 - - mypy>=0.782 + - biopython >=1.78 + - coverage >=5.3 + - cutadapt >=3.5, <=4.2 + - flake8 >=3.8.4 + - kallisto >=0.46.1, <= 0.48.0 + - mypy >=0.782 - numpy >=1.22, <1.25 - pandas >=1.3.5, <1.4.0 - - pip>=20.2.3 - - pyahocorasick>=1.4.0 - - pydantic>=1.8.1, <2 - - pylint>=2.4.4 - - pysam>=0.16.0 - - pytest>=6.1.0 - - python>=3.8, <=3.10 - - star>=2.7.6 + - pip >=20.2.3 + - pyahocorasick >=1.4.0 + - pydantic >=1.8.1, <2 + - pylint >=2.4.4 + - pysam >=0.16.0 + - pytest >=6.1.0 + - python >=3.8, <=3.10 + - star >=2.7.6 - pip: - python-semantic-release>=7.15.0 - -e . diff --git a/environment.yml b/environment.yml index 9a2f4d3e..08e4fd28 100644 --- a/environment.yml +++ b/environment.yml @@ -1,19 +1,18 @@ name: htsinfer channels: - - defaults - conda-forge - bioconda dependencies: - - biopython>=1.78 - - kallisto>=0.46.1, <= 0.48.0 + - biopython >=1.78 + - cutadapt >=3.5, <=4.2 + - kallisto >=0.46.1, <= 0.48.0 - numpy >=1.22, <1.25 - pandas >=1.3.5, <1.4.0 - - pip>=20.2.3 - - pyahocorasick>=1.4.0 - - pydantic>=1.8.1, <2 - - pysam>=0.16.0 - - python>=3.8, <=3.10 - - star>=2.7.6 - - cutadapt>=3.5, <=4.2 + - pip >=20.2.3 + - pyahocorasick >=1.4.0 + - pydantic >=1.8.1, <2 + - pysam >=0.16.0 + - python >=3.8, <=3.10 + - star >=2.7.6 - pip: - -e .