Error that GTF file does not exist

[qianzhao613]

Hi Youngbin and Dominik,

I tried running Nextflow on some public datasets and set the directory according to the requirements. However, I encountered an error indicating that the GTF file could not be found. I have verified that the path is correct and that the GTF file can be printed. Could you please help me resolve this issue?

Cheers,
Qian

[4li77l3n00b]

execute export NXF_SINGULARITY_HOME_MOUNT=true in bash.
referring to https://www.nextflow.io/docs/latest/container.html#id21

[qianzhao613]

execute export NXF_SINGULARITY_HOME_MOUNT=true in bash. referring to https://www.nextflow.io/docs/latest/container.html#id21

Thanks for your reply. The code I used is

export NXF_SINGULARITY_HOME_MOUNT=true

nextflow run main.nf -profile singularity --sample_type "mouse"

but the problem still exists. Do you have any suggestions? Thanks.