Support Jupyter Notebook #14
Workflow file for this run
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| # Test: 1. If project can build successfully with different version of Python or not. | |
| # 2. Can the example run in serial and in parallel. | |
| name: GNU Make Build Test | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the master branch | |
| push: | |
| branches: [ main ] | |
| paths-ignore: | |
| - 'doc/**' | |
| - '**.md' | |
| pull_request: | |
| branches: [ main ] | |
| paths-ignore: | |
| - 'doc/**' | |
| - '**.md' | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| jobs: | |
| # Job name: "python-build-test" | |
| make-build-test: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.7', '3.8', '3.9', '3.10', '3.11', '3.12'] | |
| steps: | |
| - name: Checkout libyt repo | |
| uses: actions/checkout@v3 | |
| - name: Setup Python ${{ matrix.python-version }} environment | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| architecture: 'x64' | |
| cache: 'pip' | |
| - run: | | |
| python -m pip install --upgrade pip | |
| pip install -r ${{ github.workspace}}/.github/tools/requirements.txt | |
| - name: Setup MPI environment | |
| uses: mpi4py/setup-mpi@v1 | |
| with: | |
| mpi: 'openmpi' | |
| - name: Install yt, mpi4py, and yt_libyt | |
| run: | | |
| pip install mpi4py yt | |
| pip install yt-libyt | |
| - name: Update GitHub Environment Variables | |
| run: | | |
| echo "PYTHON_PATH=${{ env.pythonLocation }}" >> $GITHUB_ENV | |
| echo "NUMPY_PATH=${{ env.pythonLocation }}/lib/python${{ matrix.python-version }}/site-packages/numpy" >> $GITHUB_ENV | |
| echo "LIBYT_PARALLEL_INSTALL_PATH=${{ github.workspace }}/libyt_parallel" >> $GITHUB_ENV | |
| echo "LIBYT_SERIAL_INSTALL_PATH=${{ github.workspace }}/libyt_serial" >> $GITHUB_ENV | |
| # setup-python has python3.7m only, idk why. | |
| # So split building libyt into two. | |
| - name: Set PYTHON_PATH, PYTHON_VERSION, NUMPY_PATH | |
| if: ${{ matrix.python-version == '3.7'}} | |
| run: | | |
| cd ${{ github.workspace}}/src | |
| sed -i 's@$(YOUR_PYTHON_PATH)@"${{ env.PYTHON_PATH }}"@' Makefile | |
| sed -i 's@$(YOUR_NUMPY_PATH)@"${{ env.NUMPY_PATH }}"@' Makefile | |
| sed -i 's@$(YOUR_PYTHON_VERSION)@"${{ matrix.python-version }}m"@' Makefile | |
| - name: Set PYTHON_PATH, PYTHON_VERSION, NUMPY_PATH | |
| if: ${{ matrix.python-version != '3.7' }} | |
| run: | | |
| cd ${{ github.workspace}}/src | |
| sed -i 's@$(YOUR_PYTHON_PATH)@"${{ env.PYTHON_PATH }}"@' Makefile | |
| sed -i 's@$(YOUR_NUMPY_PATH)@"${{ env.NUMPY_PATH }}"@' Makefile | |
| sed -i 's@$(YOUR_PYTHON_VERSION)@"${{ matrix.python-version }}"@' Makefile | |
| - name: Build libyt -- Parallel (MPI) | |
| run: | | |
| cd ${{ github.workspace}}/src | |
| make clean | |
| make INSTALL_PREFIX="${{ env.LIBYT_PARALLEL_INSTALL_PATH }}" install | |
| - name: Build libyt -- Serial (GCC) | |
| run: | | |
| cd ${{ github.workspace}}/src | |
| make clean | |
| make OPTIONS="-DSERIAL_MODE" | |
| make INSTALL_PREFIX="${{ env.LIBYT_SERIAL_INSTALL_PATH }}" install | |
| - name: Prepare Test | |
| run: | | |
| cd ${{ github.workspace}}/example | |
| cp ${{ github.workspace}}/.github/tests/test-DataIO/DataIOTest.py . | |
| - name: Generate Density Data for Testing | |
| run: | | |
| cd ${{ github.workspace}}/example | |
| cp ${{ github.workspace}}/.github/tools/generate_density_data.cpp . | |
| g++ -o generate_density_data generate_density_data.cpp | |
| ./generate_density_data | |
| - name: Test Run and DataIO Test - example - Serial | |
| run: | | |
| cd ${{ github.workspace}}/example | |
| make clean | |
| make OPTIONS=-DSERIAL_MODE LIBYT_PATH="${{ env.LIBYT_SERIAL_INSTALL_PATH }}" | |
| ./example DataIOTest.py | |
| - name: Test Run and DataIO Test - example - Parallel (MPI 3) | |
| run: | | |
| cd ${{ github.workspace}}/example | |
| make clean | |
| make LIBYT_PATH="${{ env.LIBYT_PARALLEL_INSTALL_PATH }}" | |
| OMPI_MCA_osc=sm,pt2pt mpirun -np 3 ./example DataIOTest.py |