diff --git a/poetry.lock b/poetry.lock
index b96f4cf9..2b9d276e 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -2451,6 +2451,17 @@ docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments
 testing = ["build[virtualenv]", "filelock (>=3.4.0)", "importlib-metadata", "ini2toml[lite] (>=0.9)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "mypy (==1.9)", "packaging (>=23.2)", "pip (>=19.1)", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-home (>=0.5)", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff (>=0.2.1)", "pytest-timeout", "pytest-xdist (>=3)", "tomli", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
 testing-integration = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "packaging (>=23.2)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"]
 
+[[package]]
+name = "shellingham"
+version = "1.5.4"
+description = "Tool to Detect Surrounding Shell"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "shellingham-1.5.4-py2.py3-none-any.whl", hash = "sha256:7ecfff8f2fd72616f7481040475a65b2bf8af90a56c89140852d1120324e8686"},
+    {file = "shellingham-1.5.4.tar.gz", hash = "sha256:8dbca0739d487e5bd35ab3ca4b36e11c4078f3a234bfce294b0a0291363404de"},
+]
+
 [[package]]
 name = "six"
 version = "1.16.0"
@@ -2876,21 +2887,53 @@ test = ["argcomplete (>=3.0.3)", "mypy (>=1.7.0)", "pre-commit", "pytest (>=7.0,
 
 [[package]]
 name = "typer"
-version = "0.11.1"
+version = "0.12.0"
+description = "Typer, build great CLIs. Easy to code. Based on Python type hints."
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "typer-0.12.0-py3-none-any.whl", hash = "sha256:0441a0bb8962fb4383b8537ada9f7eb2d0deda0caa2cfe7387cc221290f617e4"},
+    {file = "typer-0.12.0.tar.gz", hash = "sha256:900fe786ce2d0ea44653d3c8ee4594a22a496a3104370ded770c992c5e3c542d"},
+]
+
+[package.dependencies]
+typer-cli = "0.12.0"
+typer-slim = {version = "0.12.0", extras = ["standard"]}
+
+[[package]]
+name = "typer-cli"
+version = "0.12.0"
+description = "Typer, build great CLIs. Easy to code. Based on Python type hints."
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "typer_cli-0.12.0-py3-none-any.whl", hash = "sha256:7b7e2dd49f59974bb5a869747045d5444b17bffb851e006cd424f602d3578104"},
+    {file = "typer_cli-0.12.0.tar.gz", hash = "sha256:603ed3d5a278827bd497e4dc73a39bb714b230371c8724090b0de2abdcdd9f6e"},
+]
+
+[package.dependencies]
+typer-slim = {version = "0.12.0", extras = ["standard"]}
+
+[[package]]
+name = "typer-slim"
+version = "0.12.0"
 description = "Typer, build great CLIs. Easy to code. Based on Python type hints."
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "typer-0.11.1-py3-none-any.whl", hash = "sha256:4ce7b2a60b8543816ca97d5ec016026cbe95d1a7a931083b988c1d3682548fe7"},
-    {file = "typer-0.11.1.tar.gz", hash = "sha256:f5ae987b97ebbbd59182f8e84407bbc925bc636867fa007bce87a7a71ac81d5c"},
+    {file = "typer_slim-0.12.0-py3-none-any.whl", hash = "sha256:ddd7042b29a32140528caa415750bcae54113ba0c32270ca11a6f64069ddadf9"},
+    {file = "typer_slim-0.12.0.tar.gz", hash = "sha256:3e8a3f17286b173d76dca0fd4e02651c9a2ce1467b3754876b1ac4bd72572beb"},
 ]
 
 [package.dependencies]
 click = ">=8.0.0"
+rich = {version = ">=10.11.0", optional = true, markers = "extra == \"standard\""}
+shellingham = {version = ">=1.3.0", optional = true, markers = "extra == \"standard\""}
 typing-extensions = ">=3.7.4.3"
 
 [package.extras]
-all = ["colorama (>=0.4.3,<0.5.0)", "rich (>=10.11.0,<14.0.0)", "shellingham (>=1.3.0,<2.0.0)"]
+all = ["rich (>=10.11.0)", "shellingham (>=1.3.0)"]
+standard = ["rich (>=10.11.0)", "shellingham (>=1.3.0)"]
 
 [[package]]
 name = "typing-extensions"
@@ -3116,4 +3159,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p
 [metadata]
 lock-version = "2.0"
 python-versions = "^3.9, <3.12"
-content-hash = "271eef80383c7cefe70ab3c7fbafbf1b468cf79611d85c412e47bd61f35c9745"
+content-hash = "23e8956e110bc72404754fd15ec1f5ca97c78518d63e6dfdb62c7c6bc01bf0d2"
diff --git a/pyproject.toml b/pyproject.toml
index 49a1e02a..c0acd9b0 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -33,7 +33,7 @@ biopython = "^1.81"
 deprecated = "^1.2.13"
 mashumaro = "^3.7"
 urllib3 = "2.2.1"
-typer = ">=0.9,<0.12"
+typer = ">=0.9,<0.13"
 
 
 [tool.poetry.group.dev.dependencies]