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docker-compose.yml
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nginx:
image: nginx:stable-alpine
ports:
- "80:80"
- "443:443"
volumes:
- ./nginx/nginx.conf:/etc/nginx/nginx.conf:ro
- ./nginx/services.d:/etc/nginx/services.d:ro
- ./nginx/snake-oil-server.crt:/etc/nginx/server.crt:ro
- ./nginx/snake-oil-server.key:/etc/nginx/server.key:ro
- ./ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt:ro
- ./gene.iobio:/usr/share/nginx/gene.iobio:ro
- ./data-vol/local_cache:/usr/share/nginx/local_cache:ro
- /mnt/gene-data:/usr/share/nginx/data:ro
links:
- geneinfo
- gene2pheno
- genomebuild
- hpo
- coverage
- od_samtools
- samtools
- bcftools
- freebayes
- vcflib
- vt
- od_tabix
- tabix
- vcfdepther
- af
- vep
- phenolyzer
- email
geneinfo:
image: qiaoy/iobio.geneinfo:v2.3.1
volumes:
- ./ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt:ro
- ./data-vol/geneinfo:/home/iobio/workdir/geneinfo:ro
gene2pheno:
image: qiaoy/iobio.gene2pheno:v1.0
volumes:
- ./ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt:ro
- ./data-vol/gene2pheno:/home/iobio/workdir/gene2pheno:ro
genomebuild:
image: qiaoy/iobio.genomebuild:v2.3
volumes:
- ./ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt:ro
- ./data-vol/genomebuild:/home/iobio/workdir/genomebuild:ro
hpo:
image: qiaoy/iobio.hpo:v1.0
volumes:
- ./ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt:ro
- ./data-vol/hpo:/home/iobio/workdir/hpo:ro
coverage:
image: qiaoy/iobio.coverage:v2.3
volumes:
- ./ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt:ro
od_samtools:
image: qiaoy/iobio.samtools_od:v2.3.3
volumes:
- ./ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt:ro
samtools:
image: qiaoy/iobio.samtools:v2.3.1
volumes:
- ./ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt:ro
bcftools:
image: qiaoy/iobio.bcftools:v2.3
volumes:
- ./ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt:ro
freebayes:
image: qiaoy/iobio.freebayes:v2.3
volumes:
- ./ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt:ro
- ./data-vol/data:/home/iobio/workdir/data:ro
vcflib:
image: qiaoy/iobio.vcflib:v2.3
volumes:
- ./ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt:ro
vt:
image: qiaoy/iobio.vt:v2.3
volumes:
- ./ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt:ro
- ./data-vol/data:/home/iobio/workdir/data:ro
od_tabix:
image: qiaoy/iobio.tabix_od:v2.3.3
volumes:
- ./ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt:ro
tabix:
image: qiaoy/iobio.tabix:v2.3.1
volumes:
- ./ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt:ro
vcfdepther:
image: qiaoy/iobio.vcfdepther:v2.3
volumes:
- ./ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt:ro
af:
image: qiaoy/iobio.af:v2.3.1
volumes:
- ./ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt:ro
- ./data-vol/afdata:/home/iobio/workdir/afdata:ro
vep:
image: qiaoy/iobio.vep:v2.4
volumes:
- ./ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt:ro
- ./data-vol/vep-cache:/home/iobio/workdir/vep-cache:ro
- ./data-vol/data:/home/iobio/workdir/data:ro
phenolyzer:
image: qiaoy/iobio.phenolyzer:v2.3
volumes:
- ./ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt:ro
email:
image: qiaoy/iobio.email-server
volumes:
- ./ca-certificates.crt:/etc/ssl/certs/ca-certificates.crt:ro
- ./emailServer.ini:/home/iobio/workdir/emailServer.ini:ro