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utils.py
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utils.py
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import sys
import urllib
import logging
from dbs.apis.dbsClient import DbsApi
import httplib
import os
import socket
import json
import collections
from collections import defaultdict
import random
import copy
import pickle
import time
import math
import threading
import glob
import datetime
import smtplib
from email.MIMEMultipart import MIMEMultipart
from email.MIMEText import MIMEText
from email.Utils import COMMASPACE, formatdate
from email.utils import make_msgid
from RucioClient import RucioClient
## add local python paths
for p in ['/usr/lib64/python2.7/site-packages','/usr/lib/python2.7/site-packages']:
if not p in sys.path: sys.path.append(p)
def mongo_client():
import pymongo, ssl
return pymongo.MongoClient('mongodb://%s/?ssl=true' % mongo_db_url,
ssl_cert_reqs=ssl.CERT_NONE)
class unifiedConfiguration:
def __init__(self, configFile='unifiedConfiguration.json'):
# Explicitly set configFile to 'None' once you want to read from MongoDB
self.configFile = configFile
if self.configFile is None:
self.configs = self.configFile
else:
try:
self.configs = json.loads(open(self.configFile).read())
except Exception as ex:
print("Could not read configuration file: %s\nException: %s" %
(self.configFile, str(ex)))
sys.exit(124)
if self.configs is None:
try:
self.client = mongo_client()
self.db = self.client.unified.unifiedConfiguration
except Exception as ex:
print ("Could not reach pymongo.\n Exception: \n%s" % str(ex))
# self.configs = json.loads(open(self.configFile).read())
sys.exit(124)
def get(self, parameter):
if self.configs:
if parameter in self.configs:
return self.configs[parameter]['value']
else:
print parameter, 'is not defined in global configuration'
print ','.join(self.configs.keys()), 'possible'
sys.exit(124)
else:
found = self.db.find_one({"name": parameter})
if found:
found.pop("_id")
found.pop("name")
return found
else:
availables = [o['name'] for o in self.db.find_one()]
print parameter, 'is not defined in mongo configuration'
print ','.join(availables), 'possible'
sys.exit(124)
SC = unifiedConfiguration('serviceConfiguration.json')
mongo_db_url = SC.get('mongo_db_url')
dbs_url = os.getenv('UNIFIED_DBS3_READER', SC.get('dbs_url'))
dbs_url_writer = os.getenv('UNIFIED_DBS3_WRITER', SC.get('dbs_url_writer'))
phedex_url = os.getenv('UNIFIED_PHEDEX', SC.get('phedex_url'))
reqmgr_url = os.getenv('UNIFIED_REQMGR', SC.get('reqmgr_url'))
monitor_dir = os.getenv('UNIFIED_MON', SC.get('monitor_dir'))
monitor_eos_dir = SC.get('monitor_eos_dir')
monitor_dir = monitor_eos_dir
monitor_pub_dir = os.getenv('UNIFIED_MON', SC.get('monitor_pub_eos_dir'))
monitor_pub_eos_dir = SC.get('monitor_pub_eos_dir')
monitor_pub_dir = monitor_pub_eos_dir
base_dir = os.getenv('UNIFIED_DIR', SC.get('base_dir'))
base_eos_dir = SC.get('base_eos_dir')
unified_url = os.getenv('UNIFIED_URL', SC.get('unified_url'))
unified_url_eos = SC.get('unified_url_eos')
unified_url = unified_url_eos
url_eos = unified_url_eos
unified_pub_url = os.getenv('UNIFIED_URL', SC.get('unified_pub_url'))
cache_dir = SC.get('cache_dir')
FORMAT = "%(module)s.%(funcName)s(%(lineno)s) => %(message)s (%(asctime)s)"
DATEFMT = "%Y-%m-%d %H:%M:%S"
logging.basicConfig(format = FORMAT, datefmt = DATEFMT, level=logging.DEBUG)
do_html_in_each_module = False
def deep_update(d, u):
for k, v in u.items():
if isinstance(v, collections.Mapping) or isinstance(v, dict):
default = v.copy()
default.clear()
r = deep_update(d.get(k, default), v)
d[k] = r
else:
d[k] = v
return d
def sendLog( subject, text , wfi = None, show=True ,level='info'):
try:
try_sendLog( subject, text , wfi, show, level)
except Exception as e:
print "failed to send log to elastic search"
print str(e)
sendEmail('failed logging',subject+text+str(e))
def new_searchLog( q, actor=None, limit=50 ):
conn = httplib.HTTPSConnection( 'es-unified7.cern.ch' )
return _searchLog(q, actor, limit,conn, prefix = '/es/unified-logs/_doc', h = es_header())
def _searchLog( q, actor, limit, conn, prefix, h = None):
goodquery={"query": {"bool": {"must": [{"wildcard": {"meta": "*%s*"%q}}]}}, "sort": [{"timestamp": "desc"}], "_source": ["text", "subject", "date", "meta"]}
if actor:
goodquery['query']['bool']['filter'] = { "term" : { "subject" : actor}}
turl = prefix+'/_search?size=%d'%limit
print turl
conn.request("GET" , turl, json.dumps(goodquery) ,headers = h if h else {})
response = conn.getresponse()
data = response.read()
o = json.loads( data )
hits = o['hits']['hits']
return hits
def es_header():
entrypointname,password = open('Unified/secret_es.txt').readline().split(':')
import base64
auth = base64.encodestring(('%s:%s' % (entrypointname, password)).replace('\n', '')).replace('\n', '')
header = { "Authorization": "Basic %s"% auth, "Content-Type": "application/json"}
return header
def new_sendLog( subject, text , wfi = None, show=True, level='info'):
conn = httplib.HTTPSConnection( 'es-unified7.cern.ch' )
conn.request("GET", "/es", headers=es_header())
response = conn.getresponse()
data = response.read()
print data
## historical information on how the schema was created
"""
schema= {
"date": {
"type": "string",
"index": "not_analyzed"
},
"author": {
"type": "string"
},
"subject": {
"type": "string"
},
"text": {
"type": "string",
"index": "not_analyzed"
},
"meta": {
"type": "string",
"index": "not_analyzed"
},
"timestamp": {
"type": "double"
}
}
content = {}
settings = {
"settings" : {
"index" : {
"number_of_shards" : 3,
"number_of_replicas" : 2
}}}
content.update( settings )
content.update({ "mappings" : {"log" : { "properties" : schema}}})
conn.request("PUT", "/es/unified-logs", json.dumps( content ), headers = es_header())
response = conn.getresponse()
data = response.read()
print data
return
"""
_try_sendLog( subject, text, wfi, show, level, conn = conn, prefix='/es/unified-logs', h = es_header())
def try_sendLog( subject, text , wfi = None, show=True, level='info'):
re_conn = httplib.HTTPSConnection( 'es-unified7.cern.ch' )
_try_sendLog( subject, text, wfi, show, level, conn = re_conn, prefix='/es/unified-logs', h = es_header())
def _try_sendLog( subject, text , wfi = None, show=True, level='info', conn= None, prefix= '/es/unified-logs', h =None):
meta_text="level:%s\n"%level
if wfi:
## add a few markers automatically
meta_text += '\n\n'+'\n'.join(map(lambda i : 'id: %s'%i, wfi.getPrepIDs()))
_,prim,_,sec = wfi.getIO()
if prim:
meta_text += '\n\n'+'\n'.join(map(lambda i : 'in:%s'%i, prim))
if sec:
meta_text += '\n\n'+'\n'.join(map(lambda i : 'pu:%s'%i, sec))
out = filter(lambda d : not any([c in d for c in ['FAKE','None']]),wfi.request['OutputDatasets'])
if out:
meta_text += '\n\n'+'\n'.join(map(lambda i : 'out:%s'%i, out))
meta_text += '\n\n'+wfi.request['RequestName']
now_ = time.gmtime()
now = time.mktime( now_ )
now_d = time.asctime( now_ )
doc = {"author" : os.getenv('USER'),
"subject" : subject,
"text" : text ,
"meta" : meta_text,
"timestamp" : now,
"date" : now_d}
if show:
print text
encodedParams = urllib.urlencode( doc )
conn.request("POST" , prefix+'/_doc/', json.dumps(doc), headers = h if h else {})
response = conn.getresponse()
data = response.read()
try:
res = json.loads( data )
except Exception as e:
print "failed"
print str(e)
pass
def sendEmail( subject, text, sender=None, destination=None ):
UC = unifiedConfiguration()
email_destination = UC.get("email_destination")
if not destination:
destination = email_destination
else:
destination = list(set(destination))
if not sender:
map_who = {
'mcremone' : '[email protected]',
'qnguyen' : '[email protected]'
}
user = os.getenv('USER')
if user in map_who:
sender = map_who[user]
else:
sender = '[email protected]'
msg = MIMEMultipart()
msg['From'] = sender
msg['To'] = COMMASPACE.join( destination )
msg['Date'] = formatdate(localtime=True)
new_msg_ID = make_msgid()
msg['Subject'] = '[Ops] '+subject
msg.attach(MIMEText(text))
smtpObj = smtplib.SMTP()
smtpObj.connect()
smtpObj.sendmail(sender, destination, msg.as_string())
smtpObj.quit()
def condorLogger(agent, workflow, wmbs, errorcode_s):
"""
mechanism to get the condor log out of the agent to a visible place
"""
pass
def cmsswLogger(errorcode_s):
"""
mechanism to get the cmsrun log (from node, or eos) to a visible place
"""
pass
def url_encode_params(params = {}):
"""
encodes given parameters dictionary. Dictionary values
can contain list, in that case, encoded params will look
like this: param=val1¶m=val2...
"""
params_list = []
for key, value in params.items():
if isinstance(value, list):
params_list.extend([(key, x) for x in value])
else:
params_list.append((key, value))
return urllib.urlencode(params_list)
def make_x509_conn(url=reqmgr_url,max_try=5):
tries = 0
while tries<max_try:
try:
conn = httplib.HTTPSConnection(url, cert_file = os.getenv('X509_USER_PROXY'), key_file = os.getenv('X509_USER_PROXY'))
return conn
except:
tries+=1
pass
return None
def GET(url, there, l=True):
conn = make_x509_conn(url)
r1=conn.request("GET",there)
r2=conn.getresponse()
if l:
return json.loads(r2.read())
else:
return r2
class UnifiedLock:
def __init__(self, acquire=True):
self.owner = "%s-%s"%(socket.gethostname(), os.getpid())
if acquire: self.acquire()
def acquire(self):
from assignSession import session, LockOfLock
## insert a new object with the proper time stamp
ll = LockOfLock( lock=True,
time = time.mktime( time.gmtime()),
owner = self.owner)
session.add( ll )
session.commit()
def deadlock(self):
host = os.getenv('HOST',os.getenv('HOSTNAME',socket.gethostname()))
from assignSession import session, LockOfLock
to_remove = []
for ll in session.query(LockOfLock).filter(LockOfLock.lock== True).filter(LockOfLock.owner.contains(host)).all():
print ll.owner
try:
host,pid = ll.owner.split('-')
process = os.popen('ps -e -f | grep %s | grep -v grep'%pid).read()
if not process:
print "the lock",ll,"is a deadlock"
to_remove.append( ll )
else:
print "the lock on",ll.owner,"is legitimate"
except:
print ll.owner,"is not good"
if to_remove:
for ll in to_remove:
session.delete( ll )
session.commit()
def clean(self):
##TODO: remove deadlocks
##TODO: remove old entries to keep the db under control
return
def __del__(self):
self.release()
def release(self):
from assignSession import session, LockOfLock
for ll in session.query(LockOfLock).filter(LockOfLock.owner == self.owner).all():
ll.lock = False
ll.endtime = time.mktime( time.gmtime())
session.commit()
class lockInfo:
def __init__(self, andwrite=True):
self.owner = "%s-%s"%(socket.gethostname(), os.getpid())
self.unifiedlock = UnifiedLock()
def release(self, item ):
try:
self._release(item)
except Exception as e:
print "failed to release"
print str(e)
def _release(self, item ):
from assignSession import session, Lock
l = session.query(Lock).filter(Lock.item == item).first()
if not l:
sendLog('lockInfo',"[Release] %s to be released is not locked"%item)
else:
sendLog('lockInfo',"[Release] releasing %s"%item)
l.lock = False
session.commit()
def islocked( self, item):
from assignSession import session, Lock
l = session.query(Lock).filter(Lock.item == item).first()
return (l and l.lock)
def _lock(self, item, site, reason):
if not item:
sendEmail('lockInfo', "trying to lock item %s" % item)
print "[ERROR] trying to lock item",item
from assignSession import session, Lock
l = session.query(Lock).filter(Lock.item == item).first()
do_com = False
if not l:
print "in lock, making a new object for",item
l = Lock(lock=False)
l.item = item
l.is_block = '#' in item
session.add ( l )
do_com = True
else:
print "lock for",item,"already existing",l.lock
now = time.mktime(time.gmtime())
## overwrite the lock
message = "[Lock] %s"%item
if l.lock != True:
l.lock = True
do_com = True
message+=" being locked"
if reason and reason!=l.reason:
l.reason = reason
do_com =True
message+=" because of %s"%reason
if do_com:
sendLog('lockInfo',message)
l.time = now
session.commit()
def lock(self, item, site='', reason=None):
try:
self._lock( item, site, reason)
except Exception as e:
## to be removed once we have a fully functional lock db
print "could not lock",item,"at",site
print str(e)
def items(self, locked=True):
from assignSession import session, Lock
ret = sorted([ l.item for l in session.query(Lock).all() if l.lock==locked])
return ret
def tell(self, comment):
from assignSession import session, Lock
print "---",comment,"---"
for l in session.query(Lock).all():
print l.item,l.lock
print "------"+"-"*len(comment)
class statusHistory:
def __init__(self):
self.client = mongo_client()
self.db = self.client.unified.statusHistory
def content(self):
c = {}
for doc in self.db.find():
c[int(doc['time'])] = doc
return c
def add(self, now, info):
info['time'] = time.mktime(now)
info['date'] = time.asctime(now)
self.db.insert_one( info )
def trim(self, now, days):
now = time.mktime(now)
for doc in self.db.find():
if (float(now)-float(doc['time'])) > days*24*60*60:
print "trim history of",doc['_id']
self.db.delete_one( {'_id' : doc['_id']})
class StartStopInfo:
def __init__(self):
self.client = mongo_client()
self.db = self.client.unified.startStopTime
def pushStartStopTime(self, component, start, stop):
doc = { 'component' : component,
'start' : int(start),
}
if stop is not None:
doc.update({
'stop' : int(stop),
'lap' : int(stop)-int(start)
})
self.db.update_one( {'component': component, 'start' : int(start)},
{"$set": doc},
upsert = True)
def get(self, component, metric='lap'):
res = [oo[metric] for oo in sorted(self.db.find({'component' : component}), key = lambda o : o['start']) if metric in oo]
return res
def purge(self, now, since_in_days):
then = now - (since_in_days*24*60*60)
self.db.delete_many( { 'start' : {'$lt': then }})
def checkMemory():
import resource
rusage_denom = 1024.
mem = resource.getrusage(resource.RUSAGE_SELF).ru_maxrss / rusage_denom
return mem
class componentInfo:
def __init__(self, block=True, mcm=None, soft=None, keep_trying=False, check_timeout = 120):
self.checks = componentCheck(block, mcm, soft, keep_trying)
self.check_timeout = check_timeout
# start the checking
self.checks.start()
def check(self):
check_start = time.mktime(time.gmtime())
# on timeout
ping = 10
while self.checks.is_alive():
now = time.mktime(time.gmtime())
if (now-check_start) > self.check_timeout:
alarm = "Timeout in checking the sanity of components %d > %d , while checking on %s"%(now-check_start,self.check_timeout, self.checks.checking)
sendLog('componentInfo',alarm, level='critical')
return False
print "componentInfo, ping",now,check_start,now-check_start
time.sleep(ping)
self.status = self.checks.status
print "componentInfo, going with"
print self.checks.go
return self.checks.go
class componentCheck(threading.Thread):
def __init__(self, block=True, mcm=None, soft=None, keep_trying=False):
threading.Thread.__init__(self)
self.daemon = True
if soft is None:
self.soft = ['mcm','wtc', 'mongo' , 'jira'] ##components that are not mandatory
else:
self.soft = soft
self.block = block
self.status ={
'reqmgr' : False,
'mcm' : False,
'dbs' : False,
'cmsr' : False,
'wtc' : False,
'eos' : False,
'mongo' : False,
'jira' : False
}
self.code = 0
self.keep_trying = keep_trying
self.go = False
self.checking=None
def run(self):
self.go = self.check()
print "componentCheck finished"
def check_cmsr(self):
from assignSession import session, Workflow
all_info = session.query(Workflow).filter(Workflow.name.contains('1')).all()
def check_reqmgr(self):
data = getReqmgrInfo(reqmgr_url)
def check_mcm(self):
from McMClient import McMClient
mcmC = McMClient(dev=False)
test = mcmC.getA('requests',page=0)
time.sleep(1)
if not test:
raise Exception("mcm is corrupted")
def check_dbs(self):
dbsapi = DbsApi(url=dbs_url)
if 'testbed' in dbs_url:
blocks = dbsapi.listBlockSummaries( dataset = '/QDTojWinc_NC_M-1200_TuneZ2star_8TeV-madgraph/Summer12pLHE-DMWM_Validation_DONOTDELETE_Alan_TEST-v1/GEN', detail\
=True)
else:
blocks = dbsapi.listBlockSummaries( dataset = '/TTJets_mtop1695_TuneCUETP8M1_13TeV-amcatnloFXFX-pythia8/RunIIWinter15GS-MCRUN2_71_V1-v1/GEN-SIM', detail=True)
if not blocks:
raise Exception("dbs corrupted")
def check_wtc(self):
from wtcClient import wtcClient
WC = wtcClient()
a = WC.get_actions()
if a is None:
raise Exception("No action can be retrieved")
def check_eos(self):
eosfile = base_eos_dir+'/%s-testfile'%os.getpid()
oo = eosFile(eosfile)
oo.write("Testing I/O on eos")
r = oo.close() ## commits to eos
if r:
r = os.system('env EOS_MGM_URL=root://eoscms.cern.ch eos rm %s'% eosfile)
if not r == 0:
raise Exception("failed to I/O on eos")
def check_mongo(self):
db = agentInfoDB()
infos = [a['status'] for a in db.find()]
def check_jira(self):
from JIRAClient import JIRAClient
JC = JIRAClient()
opened = JC.find({'status': 'OPEN'})
def check(self):
ecode = 120
for component in sorted(self.status):
ecode+=1
self.checking = component
while True:
try:
print "checking on",component
sys.stdout.flush()
getattr(self,'check_%s'%component)()
self.status[component] = True
break
except Exception as e:
self.tell(component)
if self.keep_trying:
print "re-checking on",component
time.sleep(30)
continue
import traceback
print traceback.format_exc()
print component,"is unreachable"
print str(e)
if self.block and not (self.soft and component in self.soft):
self.code = ecode
return False
break
print json.dumps( self.status, indent=2)
sys.stdout.flush()
return True
def tell(self, c):
host = socket.gethostname()
sendLog('componentInfo',"The %s component is unreachable from %s"%(c, host), level='critical')
def is_json(myjson):
try:
json_object = json.loads(myjson)
except ValueError, e:
return False
return True
def read_file(target):
content = open(target).read()
if target.endswith('json'):
if is_json(content):
return content
else:
print("Opening an invalid json file")
sendLog("eosRead","Error reading json file {} at {}".format(target, datetime.datetime.now()), level='critical')
return "{}"
else:
return content
def eosRead(filename,trials=5):
filename = filename.replace('//','/')
if not filename.startswith('/eos/'):
print filename,"is not an eos path in eosRead"
T=0
while T<trials:
T+=1
try:
return read_file(filename)
except Exception as e:
print "failed to read",filename,"from eos"
time.sleep(2)
cache = (cache_dir+'/'+filename.replace('/','_')).replace('//','/')
r = os.system('env EOS_MGM_URL=root://eoscms.cern.ch eos cp %s %s'%( filename, cache ))
if r==0:
return read_file(cache)
print "unable to read from eos"
return None
class eosFile(object):
def __init__(self, filename, opt='w', trials=5):
if not filename.startswith('/eos/'):
print filename,"is not an eos path"
sys.exit(2)
self.opt = opt
self.eos_filename = filename.replace('//','/')
self.cache_filename = (cache_dir+'/'+filename.replace('/','_')).replace('//','/')
self.cache = open(self.cache_filename, self.opt)
self.trials = trials
def write(self, something):
self.cache.write( something )
return self
def close(self):
self.cache.close()
bail_and_email = False
T = 0
while T < self.trials:
T += 1
try:
print "moving",self.cache_filename,"to",self.eos_filename
print("Attempt {}".format(T))
r = os.system("env EOS_MGM_URL=root://eoscms.cern.ch eos cp %s %s"%( self.cache_filename, self.eos_filename))
if r==0 and os.path.getsize(self.eos_filename) > 0: return True
print "not able to copy to eos",self.eos_filename,"with code",r
time.sleep(30)
if bail_and_email:
h = socket.gethostname()
print 'eos is acting up on %s on %s. not able to copy %s to eos code %s'%( h, time.asctime(), self.eos_filename, r)
break
except Exception as e:
print "Failed to copy",self.eos_filename,"with",str(e)
if bail_and_email:
h = socket.gethostname()
print 'eos is acting up on %s on %s. not able to copy %s to eos \n%s'%( h, time.asctime(), self.eos_filename, str(e))
break
else:
time.sleep(30)
h = socket.gethostname()
msg = 'eos is acting up on %s on %s. not able to copy %s to eos'%( h, time.asctime(), self.eos_filename)
sendEmail('eosFile',msg)
print(msg)
return False
class batchInfo:
def __init__(self):
self.client = mongo_client()
self.db = self.client.unified.batchInfo
def update(self, name, a_list):
ex = self.db.find_one({'name' : name})
if ex:
ex['ids'] = list(set(list(ex['ids'])+list(a_list)))
else:
ex = {'ids': list(a_list)}
self.add( name, ex)
def add(self, name, content):
## update if necessary
self.db.update_one({'name' : name},
{"$set": content},
upsert = True
)
def content(self):
c = {}
for o in self.db.find():
c[o['name']] = o['ids']
return c
def all(self):
return [o['name'] for o in self.db.find()]
def pop(self, name):
self.db.delete_one({'name': name})
class campaignInfo:
def __init__(self):
self.campaigns = {}
self.client = mongo_client()
self.db = self.client.unified.campaignsConfiguration
self.campaigns = self.content()
SI = global_SI()
for c in self.campaigns:
if 'parameters' in self.campaigns[c]:
if 'SiteBlacklist' in self.campaigns[c]['parameters']:
for black in copy.deepcopy(self.campaigns[c]['parameters']['SiteBlacklist']):
if black.endswith('*'):
self.campaigns[c]['parameters']['SiteBlacklist'].remove( black )
reg = black[0:-1]
self.campaigns[c]['parameters']['SiteBlacklist'].extend( [site for site in (SI.all_sites) if site.startswith(reg)] )
def content(self):
uc = {}
for c in self.db.find():
c.pop("_id")
uc[c.pop("name")] = c
return uc
def all(self, c_type = None):
return [o['name'] for o in self.db.find() if (c_type == None or o.get('type',None) == c_type)]
def update(self, c_dict, c_type=None):
for k,v in c_dict.items():
self.add( k, v, c_type=c_type)
def add(self, name, content, c_type=None):
## update if needed
content['name'] = name
if c_type:
content['type'] = c_type
self.db.update_one({'name' : name},
{"$set": content},
upsert = True
)
def pop(self, item_name):
print "removing",item_name,"from campaign configuration"
self.db.delete_one({'name' : item_name})
def go(self, c, s=None):
GO = False
if c in self.campaigns and self.campaigns[c]['go']:
if 'labels' in self.campaigns[c]:
if s!=None:
GO = (s in self.campaigns[c]['labels']) or any([l in s for l in self.campaigns[c]['labels']])
else:
print "Not allowed to go for",c,s
GO = False
else:
GO = True
elif c in self.campaigns and not self.campaigns[c]['go']:
if s and 'pilot' in s.lower():
GO = True
else:
print "Not allowed to go for",c
GO = False
return GO
def get(self, c, key, default):
if c in self.campaigns:
if key in self.campaigns[c]:
return copy.deepcopy(self.campaigns[c][key])
return copy.deepcopy(default)
def parameters(self, c):
if c in self.campaigns and 'parameters' in self.campaigns[c]:
return self.campaigns[c]['parameters']
else:
return {}
def allSecondaries(self):
secs = set()
for c in self.campaigns:
if self.campaigns[c].get('go'):
for sec in self.campaigns[c].get('secondaries',{}):
if not sec: continue
secs.add( sec )
return sorted(secs)
class moduleLock(object):
def __init__(self,component=None, silent=False, wait=False, max_wait = 18000, locking=True):
if not component:
component = sys._getframe(1).f_code.co_name
self.poll = 30
self.pid = os.getpid()
self.host = socket.gethostname()
self.component = component
self.wait = wait
self.silent= silent
self.max_wait = max_wait
self.locking = locking
self.client = mongo_client()
self.db = self.client.unified.moduleLock
def check(self, hours_before_kill = 24):
host = socket.gethostname()
locks = [l for l in self.db.find({'host' : host})]
now = time.mktime(time.gmtime())
for lock in locks:
pid = lock.get('pid',None)
print "checking on %s on %s"%( pid, host)
on_since = now - lock.get('time',now)
if on_since > (hours_before_kill*60*60):
alarm = "process %s on %s for module %s is running since %s : killing"%( pid, host, lock.get('component',None), display_time( on_since))
sendLog('heartbeat', alarm, level='critical')
os.system('sudo kill -9 %s'%(pid))
time.sleep(2)
if not os.path.isdir('/proc/%s'% pid):
alarm = "process %s is not present on %s"%( pid, host)
sendLog('heartbeat', alarm, level='critical')
self.db.delete_one({ '_id' : lock.get('_id',None)})
def all_locks(self):
locks = [l for l in self.db.find()]
print "module locks available in mongodb"
print sorted(locks)
def clean(self, component=None, pid=None, host=None):
sdoc = {'component' : component}
if pid is not None:
sdoc.update({'pid' : pid})
if host is not None:
sdoc.update({'host' : host})
self.db.delete_many( sdoc )
def __call__(self):
print "module lock for component",self.component,"from mongo db"
polled = 0
nogo = True
locks = []
i_try = 0
while True:
if not self.locking:
nogo = False
break
## check from existing such lock, solely based on the component, nothing else
locks = [l for l in self.db.find({'component' : self.component})]
if locks:
if not self.wait:
nogo =True
break
else:
print "Waiting for other %s components to stop running \n%s" % ( self.component , locks)
time.sleep( self.poll )
polled += self.poll
else:
## nothing is in the way. go ahead
nogo = False
break
i_try += 1
if self.max_wait and polled > self.max_wait:
print "stop waiting for %s to be released"% ( self.component )
break
if not nogo:
## insert a lock doc
n = time.gmtime()
now = time.mktime( n )
nows = time.asctime( n )
lockdoc = {'component' : self.component,
'host' : self.host,
'pid' : self.pid,
'time' : now,
'date' : nows}
self.db.insert_one( lockdoc )
#print lockdoc
else:
if not self.silent:
msg = 'There are %s instances running.Possible deadlock. Tried for %d [s] \n%s'%(len(locks),
polled,
locks)
sendLog('heartbeat', msg , level='critical')
print msg
return nogo
def __del__(self):
# remove the lock doc
self.clean( component = self.component,
pid = self.pid,
host = self.host)
def userLock(component=None):
if not component:
## get the caller
component = sys._getframe(1).f_code.co_name
lockers = ['dmytro','mcremone','vlimant']
for who in lockers:
if os.path.isfile('/afs/cern.ch/user/%s/%s/public/ops/%s.lock'%(who[0],who,component)):
print "disabled by",who
return True
return False
def getWMStats(url):
conn = make_x509_conn(url)
url = '/wmstatsserver/data/requestcache'
r1=conn.request("GET",url,headers={"Accept":"application/json"})
r2=conn.getresponse()
return json.loads(r2.read())['result'][0]
def get_dashbssb(path_name, ssb_metric):
return runWithRetries(_get_dashbssb, [path_name, ssb_metric],{})
def _get_dashbssb(path_name, ssb_metric):
with open('Unified/monit_secret.json') as monit:
conf = json.load(monit)
query = """'{"search_type":"query_then_fetch","ignore_unavailable":true,"index":["monit_prod_cmssst_*","monit_prod_cmssst_*"]}
{"size":1,"query":{"bool":{"filter":[{"range":{"metadata.timestamp":{"gte":"now-2d","lte":"now","format":"epoch_millis"}}},{"query_string":{"analyze_wildcard":true,"query":"metadata.type: ssbmetric AND metadata.type_prefix:raw AND metadata.path: %s"}}]}},"sort":{"metadata.timestamp":{"order":"desc","unmapped_type":"boolean"}},"script_fields":{},"docvalue_fields":["metadata.timestamp"]}
'"""%(str(path_name))
TIMESTAMP = json.loads(os.popen('curl -s -X POST %s -H "Authorization: Bearer %s" -H "Content-Type: application/json" -d %s'%(conf["url"],conf["token"],query)).read())["responses"][0]["hits"]["hits"][0]["_source"]["metadata"]["timestamp"]