diff --git a/cutseq/run.py b/cutseq/run.py index e3f1560..8c70d74 100644 --- a/cutseq/run.py +++ b/cutseq/run.py @@ -254,7 +254,8 @@ def __init__(self): # https://www.idtdna.com/pages/products/next-generation-sequencing/workflow/xgen-ngs-library-preparation/methyl-seq-dna-library-kit#product-details # https://sfvideo.blob.core.windows.net/sitefinity/docs/default-source/technical-report/tail-trimming-for-better-data-technical-note.pdf?sfvrsn=135efe07_4 # 10 bases from END of R1 10 bases from START of R2 - "XGENMETHY": "ACACGACGCTCTTCCGATCTXXXXXX>XXXXXXXXXXAGATCGGAAGAGCACACGTC", + # remove 2 letter from the begin of R1, which might be random primer + "XGENMETHY": "ACACGACGCTCTTCCGATCTXX>XXXXXXXXXXAGATCGGAAGAGCACACGTC", # for snmC-seq, trim 15 bases "XGENSNMC": "ACACGACGCTCTTCCGATCTXXXXXX>XXXXXXXXXXXXXXXAGATCGGAAGAGCACACGTC", # The general method for xGen / Swift kit, might be better than hard clip, TODO diff --git a/pyproject.toml b/pyproject.toml index 0907372..75119da 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "cutseq" -version = "0.0.56" +version = "0.0.57" description = "Automatically cut adapter / barcode / UMI from NGS data" authors = ["Ye Chang "] license = "MIT"