DESCRIPTION

Package: OmicGsea
Type: Package
Title: Geneset Enrichment Analysis for Complex Omics Data
Version: 0.99.0
Authors@R:
  c(person("Zongli","Xu",email="xuz@niehs.nih.gov",role=c("cre","aut"),comment=c(ORCID="0000-0002-9034-8902")),
   person("Alison","Motsinger-Reif",email="alison.motsinger-reif@nih.gov",role="aut"),
    person("Liang", "Niu", role="aut",email="niulg@ucmail.uc.edu"))
Description: The R package OmicGsea offers versatile gene set enrichment analysis tools for complex omics datasets, including DNA methylation, proteomics and gene expression. It addresses challenges like correlated probes, probe number bias, and multi-mapping probes with threshold- and ranking-based methods. The package also features a fast, accurate ranking-based method optimized for gene expression and RNA-seq data.
License: Artistic-2.0
biocViews: GeneSetEnrichment, Pathways,DNAMethylation,Proteomics,
	CopyNumberVariation, GeneExpression, GenomicVariation 
Depends: utils,stats,parallel,Matrix
Suggests: msigdbr, org.Hs.eg.db, org.Mm.eg.db, minfi, knitr, rmarkdown, GO.db
Imports:  dqrng,AnnotationDbi,poolr,BiasedUrn
VignetteBuilder: knitr
Encoding: UTF-8
URL: https://github.com/Bioconductor/OmicGsea
BugReports: https://github.com/Bioconductor/OmicGsea/issues
git_url: https://git.bioconductor.org/packages/OmicGsea
Maintainer: Zongli Xu <xuz@niehs.nih.gov>
NeedsCompilation: no