Update info for installation

xiyupeng · Jan 19, 2024 · 68e365a · 68e365a
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -5,7 +5,7 @@ Version: 1.0.1.9000
 Date: 2023-12-20
 Authors@R: person("Xiyu", "Peng", email = "[email protected]",
   role = c("aut", "cre"),comment = c(ORCID = "0000-0003-4232-0910"))
-Description: A novel spatial topic model to integrate both cell type and spatial information to identify the complex spatial tissue architecture on multiplexed tissue images without human intervention. The Package implements a Collapsed Gibbs sampling algorithm for inference. 'SpaTopic' is scalable to large-scale image datasets without extracting neighborhood information for every single cell. For more details on the methodology, see <https://xiyupeng.github.io/SpaTopic/>.
+Description: A novel spatial topic model to integrate both cell type and spatial information to identify the complex spatial tissue architecture on multiplexed tissue images without human intervention. The Package implements a collapsed Gibbs sampling algorithm for inference. 'SpaTopic' is scalable to large-scale image datasets without extracting neighborhood information for every single cell. For more details on the methodology, see <https://xiyupeng.github.io/SpaTopic/>.
 License: GPL (>= 3)
 Depends: R (>= 3.5.0),
 Imports: Rcpp (>= 0.12.0),

diff --git a/README.md b/README.md
@@ -13,7 +13,13 @@ Compared to other KNN-based methods (such as KNN-kmeans, the default in Seurat v
 
 ## Installation
 
-`SpaTopic` can be installed from the [GitHub repository](https://github.com/xiyupeng/SpaTopic) using the devtools package.
+The R package `SpaTopic` now is available in CRAN and can be installed with the following code.
+
+``` r
+install.packages("SpaTopic")
+```
+
+The development version of `SpaTopic` can be installed from the [GitHub repository](https://github.com/xiyupeng/SpaTopic).
 
 ``` r
 # install.packages("devtools")

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/LICENSE.html b/docs/LICENSE.html
diff --git a/docs/articles/Intro_SpaTopic.html b/docs/articles/Intro_SpaTopic.html
diff --git a/docs/articles/Model_Selection.html b/docs/articles/Model_Selection.html
diff --git a/docs/articles/SpaTopic.html b/docs/articles/SpaTopic.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -5,5 +5,5 @@ articles:
   Model_Selection: Model_Selection.html
   SpaTopic: SpaTopic.html
   Intro_SpaTopic: Intro_SpaTopic.html
-last_built: 2024-01-19T20:43Z
+last_built: 2024-01-19T21:29Z
 
diff --git a/docs/reference/Seurat5obj_to_SpaTopic.html b/docs/reference/Seurat5obj_to_SpaTopic.html
diff --git a/docs/reference/SpaTopic-Package.html b/docs/reference/SpaTopic-Package.html
diff --git a/docs/reference/SpaTopic_inference.html b/docs/reference/SpaTopic_inference.html
diff --git a/docs/reference/gibbs.res-class.html b/docs/reference/gibbs.res-class.html
diff --git a/docs/reference/index.html b/docs/reference/index.html