From 012160ede956c40a0a58bf042d4d9b78d283cdad Mon Sep 17 00:00:00 2001
From: Nils Winter <nils.r.winter@gmail.com>
Date: Fri, 2 Aug 2024 17:57:39 +0200
Subject: [PATCH] Add option to save configuration to pickle file

---
 examples/config.pkl       | Bin 0 -> 590 bytes
 examples/example_slurm.sh |   2 +-
 examples/save_config.py   |   2 +-
 3 files changed, 2 insertions(+), 2 deletions(-)
 create mode 100644 examples/config.pkl

diff --git a/examples/config.pkl b/examples/config.pkl
new file mode 100644
index 0000000000000000000000000000000000000000..3d66d85ee63357734f1684541b8497a92e7938b4
GIT binary patch
literal 590
zcmZ`$y-ve05Qd7XKPp8k1C*f%!2lil3JeH3M5-zk#>jGGr?yC($aXp)A;HFQ8^-`|
z!XxljI7v%?ByPO>?!KRU+55Pu>=gBkmrx1j2tD%{ajMlIP8g4f;Smq4Ow@pwG?Esf
z>fI#~!*{%T#eA!-%85a*3N<6LFpN09K}%D`l9(7vEl01PO`$H8;+i-bQGwQ^gieaH
z%X6aU?LxzHV~LSZ9EaCGpLu;j(`qUmSKb|ohS!G<VLYT+WXU@IyTm)XHfJ-wa)8hY
z(s;1lJbF-aPPKF@ZykQJG`w=SxZ`|CV`YFoLM?R}nM5HK9UsLZG{^Tsb0apQY1qG>
z@0=`@QD_E<)@7{j*obCR*Gs9UF_~$}5KjMpg5wPY!u~jibIbKG-&n*aF8ur_;#hPG
zT|EjXn|=vd;}+-8-5#$bi?fWHsmt+zGDZqqC?m({p4(O=<vPytOcLc@&$7WUJ(KMj

literal 0
HcmV?d00001

diff --git a/examples/example_slurm.sh b/examples/example_slurm.sh
index b091dd4..4d4115b 100644
--- a/examples/example_slurm.sh
+++ b/examples/example_slurm.sh
@@ -16,4 +16,4 @@ module load Miniconda3
 eval "$(conda shell.bash hook)"
 conda activate cpm
 
-python cpm_analysis.py --results_directory "" --data_directory "" --config_file "" perm_run $SLURM_ARRAY_TASK_ID
+python cpm_analysis.py --results_directory "./tmp/slurm" --data_directory "./simulated_data/" --config_file "./config.pkl" perm_run $SLURM_ARRAY_TASK_ID
diff --git a/examples/save_config.py b/examples/save_config.py
index d5d9a95..6bf1aca 100644
--- a/examples/save_config.py
+++ b/examples/save_config.py
@@ -20,7 +20,7 @@
                     cv_edge_selection=ShuffleSplit(n_splits=1, test_size=0.2, random_state=42),
                     add_edge_filter=True,
                     n_permutations=100)
-cpm.save_configuration(config_filename='./tmp/config.pkl')
+cpm.save_configuration(config_filename='./config.pkl')
 
 cpm_remote = CPMRegression(results_directory='./tmp/example_simulated_data2')
 cpm_remote.load_configuration(results_directory='./tmp/example_simulated_data3',