diff --git a/.github/workflows/dev_ci_cd_conda.yml b/.github/workflows/dev_ci_cd_conda.yml index 375ef93..8ca9a08 100644 --- a/.github/workflows/dev_ci_cd_conda.yml +++ b/.github/workflows/dev_ci_cd_conda.yml @@ -18,13 +18,6 @@ jobs: shell: bash -l {0} steps: - uses: actions/checkout@v4 - - uses: conda-incubator/setup-miniconda@v2 - with: - miniconda-version: "latest" - channels: bioconda, conda-forge, defaults - use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly! - auto-update-conda: true - auto-activate-base: true - name: Set up Python ${{ matrix.python-version }} uses: actions/setup-python@v5 with: @@ -36,13 +29,11 @@ jobs: sudo apt install -y gdal-bin libgdal-dev - name: Install Packages run: | - conda env create --name env --file=.github/environment.yml --yes + conda env update --file=.github/environment.yml --name base --yes + - name: Install GDAL + run: | conda install gdal --yes conda upgrade numpy --yes - - name: Initialize Environment - run: | - source ~/.bashrc - conda activate env - name: Run Tests env: GOOGLE_APPLICATION_USER: ${{ secrets.GOOGLE_APPLICATION_USER }}