From 5264c49236c99d2ad71a1e093ea77c8fe220f0ee Mon Sep 17 00:00:00 2001
From: Matt Jones <mattjones315@gmail.com>
Date: Thu, 1 Jun 2023 10:12:12 -0700
Subject: [PATCH] reordered cells to enable correct plotting (#204)

Co-authored-by: Matthew Gregory Jones <mgjones@DERM-C02D10KCM0XV.stanford.edu>
---
 jupyter-book/trajectories/lineage_tracing.ipynb | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/jupyter-book/trajectories/lineage_tracing.ipynb b/jupyter-book/trajectories/lineage_tracing.ipynb
index 0d57c6fc..4b38a109 100644
--- a/jupyter-book/trajectories/lineage_tracing.ipynb
+++ b/jupyter-book/trajectories/lineage_tracing.ipynb
@@ -1717,6 +1717,10 @@
     }
    ],
    "source": [
+    "tree.cell_meta = pd.DataFrame(\n",
+    "    kptracer_adata.obs.loc[tree.leaves, \"Cluster-Name\"].astype(str)\n",
+    ")\n",
+    "\n",
     "cas.pl.plot_matplotlib(tree, meta_data=[\"Cluster-Name\"])"
    ]
   },
@@ -1749,10 +1753,6 @@
     }
    ],
    "source": [
-    "tree.cell_meta = pd.DataFrame(\n",
-    "    kptracer_adata.obs.loc[tree.leaves, \"Cluster-Name\"].astype(str)\n",
-    ")\n",
-    "\n",
     "parsimony = cas.tl.score_small_parsimony(tree, meta_item=\"Cluster-Name\")\n",
     "\n",
     "plasticity = parsimony / len(tree.nodes)\n",
@@ -2002,7 +2002,7 @@
  ],
  "metadata": {
   "kernelspec": {
-   "display_name": "Python 3.10.5 64-bit",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -2016,7 +2016,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.10.8"
+   "version": "3.9.12"
   },
   "vscode": {
    "interpreter": {