diff --git a/.cookietemple.yml b/.cookietemple.yml
index 00c878f..22da5f1 100644
--- a/.cookietemple.yml
+++ b/.cookietemple.yml
@@ -15,5 +15,5 @@ full_name: Mario Picciani
 email: mario.picciani@tum.de
 project_name: spectrum_io
 project_short_description: IO related functionalities for oktoberfest.
-version: 0.3.1
+version: 0.3.2
 license: MIT
diff --git a/.github/release-drafter.yml b/.github/release-drafter.yml
index 6726fa5..f3caebd 100644
--- a/.github/release-drafter.yml
+++ b/.github/release-drafter.yml
@@ -1,5 +1,5 @@
-name-template: "0.3.1 🌈" # <<COOKIETEMPLE_FORCE_BUMP>>
-tag-template: 0.3.1 # <<COOKIETEMPLE_FORCE_BUMP>>
+name-template: "0.3.2 🌈" # <<COOKIETEMPLE_FORCE_BUMP>>
+tag-template: 0.3.2 # <<COOKIETEMPLE_FORCE_BUMP>>
 exclude-labels:
     - "skip-changelog"
 
diff --git a/cookietemple.cfg b/cookietemple.cfg
index 11900f1..e68513b 100644
--- a/cookietemple.cfg
+++ b/cookietemple.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.3.1
+current_version = 0.3.2
 
 [bumpversion_files_whitelisted]
 init_file = spectrum_io/__init__.py
diff --git a/docs/conf.py b/docs/conf.py
index d5fda71..1ee140d 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -53,9 +53,9 @@
 # the built documents.
 #
 # The short X.Y version.
-version = "0.3.1"
+version = "0.3.2"
 # The full version, including alpha/beta/rc tags.
-release = "0.3.1"
+release = "0.3.2"
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.
diff --git a/poetry.lock b/poetry.lock
index ac01e08..c18cb96 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -72,34 +72,34 @@ yaml = ["PyYAML"]
 
 [[package]]
 name = "black"
-version = "23.7.0"
+version = "23.9.1"
 description = "The uncompromising code formatter."
 category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
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+    {file = "black-23.9.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:50254ebfa56aa46a9fdd5d651f9637485068a1adf42270148cd101cdf56e0ad9"},
+    {file = "black-23.9.1-cp39-cp39-win_amd64.whl", hash = "sha256:403397c033adbc45c2bd41747da1f7fc7eaa44efbee256b53842470d4ac5a70f"},
+    {file = "black-23.9.1-py3-none-any.whl", hash = "sha256:6ccd59584cc834b6d127628713e4b6b968e5f79572da66284532525a042549f9"},
+    {file = "black-23.9.1.tar.gz", hash = "sha256:24b6b3ff5c6d9ea08a8888f6977eae858e1f340d7260cf56d70a49823236b62d"},
 ]
 
 [package.dependencies]
@@ -109,7 +109,7 @@ packaging = ">=22.0"
 pathspec = ">=0.9.0"
 platformdirs = ">=2"
 tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
-typing-extensions = {version = ">=3.10.0.0", markers = "python_version < \"3.10\""}
+typing-extensions = {version = ">=4.0.1", markers = "python_version < \"3.11\""}
 
 [package.extras]
 colorama = ["colorama (>=0.4.3)"]
@@ -262,14 +262,14 @@ files = [
 
 [[package]]
 name = "click"
-version = "8.1.6"
+version = "8.1.7"
 description = "Composable command line interface toolkit"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
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-    {file = "click-8.1.6.tar.gz", hash = "sha256:48ee849951919527a045bfe3bf7baa8a959c423134e1a5b98c05c20ba75a1cbd"},
+    {file = "click-8.1.7-py3-none-any.whl", hash = "sha256:ae74fb96c20a0277a1d615f1e4d73c8414f5a98db8b799a7931d1582f3390c28"},
+    {file = "click-8.1.7.tar.gz", hash = "sha256:ca9853ad459e787e2192211578cc907e7594e294c7ccc834310722b41b9ca6de"},
 ]
 
 [package.dependencies]
@@ -289,123 +289,136 @@ files = [
 
 [[package]]
 name = "contourpy"
-version = "1.1.0"
+version = "1.1.1"
 description = "Python library for calculating contours of 2D quadrilateral grids"
 category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [[package]]
@@ -567,19 +580,20 @@ test = ["pytest (>=6)"]
 
 [[package]]
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+version = "3.12.4"
 description = "A platform independent file lock."
 category = "dev"
 optional = false
-python-versions = ">=3.7"
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 [[package]]
 name = "flake8"
@@ -671,46 +685,46 @@ develop = ["build", "twine"]
 
 [[package]]
 name = "fonttools"
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 python-versions = ">=3.8"
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 ]
 
 [package.extras]
@@ -744,19 +758,22 @@ smmap = ">=3.0.1,<6"
 
 [[package]]
 name = "gitpython"
-version = "3.1.32"
+version = "3.1.37"
 description = "GitPython is a Python library used to interact with Git repositories"
 category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
 gitdb = ">=4.0.1,<5"
 
+[package.extras]
+test = ["black", "coverage[toml]", "ddt (>=1.1.1,!=1.4.3)", "mypy", "pre-commit", "pytest", "pytest-cov", "pytest-sugar"]
+
 [[package]]
 name = "h5py"
 version = "3.9.0"
@@ -793,14 +810,14 @@ numpy = ">=1.17.3"
 
 [[package]]
 name = "identify"
-version = "2.5.26"
+version = "2.5.29"
 description = "File identification library for Python"
 category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
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 [package.dependencies]
@@ -1244,11 +1303,12 @@ cycler = ">=0.10"
 fonttools = ">=4.22.0"
 importlib-resources = {version = ">=3.2.0", markers = "python_version < \"3.10\""}
 kiwisolver = ">=1.0.1"
-numpy = ">=1.20"
+numpy = ">=1.20,<2"
 packaging = ">=20.0"
 pillow = ">=6.2.0"
-pyparsing = ">=2.3.1,<3.1"
+pyparsing = ">=2.3.1"
 python-dateutil = ">=2.7"
+setuptools_scm = ">=7"
 
 [[package]]
 name = "mccabe"
@@ -1300,107 +1360,105 @@ research = ["entsoe-py (>=0.3.2)", "lxml (>=4.6.2)", "python-dotenv (>=0.15.0)",
 
 [[package]]
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 optional = false
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 [[package]]
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@@ -1724,14 +1780,14 @@ testing = ["pytest", "pytest-benchmark"]
 
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 [package.dependencies]
@@ -1850,14 +1906,14 @@ pynumpress = ["pynumpress (>=0.0.4)"]
 
 [[package]]
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-version = "3.0.9"
+version = "3.1.1"
 description = "pyparsing module - Classes and methods to define and execute parsing grammars"
 category = "main"
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 python-versions = ">=3.6.8"
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 ]
 
 [package.extras]
@@ -1865,19 +1921,19 @@ diagrams = ["jinja2", "railroad-diagrams"]
 
 [[package]]
 name = "pyteomics"
-version = "4.6"
+version = "4.6.2"
 description = "A framework for proteomics data analysis."
 category = "main"
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 python-versions = "*"
 files = [
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-df = ["pandas"]
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+df = ["pandas (>=0.17)"]
 graphics = ["matplotlib"]
 mzmlb = ["h5py", "hdf5plugin"]
 numpress = ["pynumpress"]
@@ -1888,14 +1944,14 @@ xml = ["lxml", "numpy"]
 
 [[package]]
 name = "pytest"
-version = "7.4.0"
+version = "7.4.2"
 description = "pytest: simple powerful testing with Python"
 category = "dev"
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 python-versions = ">=3.7"
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 ]
 
 [package.dependencies]
@@ -1926,14 +1982,14 @@ six = ">=1.5"
 
 [[package]]
 name = "pytz"
-version = "2023.3"
+version = "2023.3.post1"
 description = "World timezone definitions, modern and historical"
 category = "main"
 optional = false
 python-versions = "*"
 files = [
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 ]
 
 [[package]]
@@ -2137,14 +2193,14 @@ docutils = ">=0.11,<1.0"
 
 [[package]]
 name = "rich"
-version = "13.5.2"
+version = "13.5.3"
 description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
 category = "main"
 optional = false
 python-versions = ">=3.7.0"
 files = [
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 ]
 
 [package.dependencies]
@@ -2247,38 +2303,38 @@ gitlab = ["python-gitlab (>=1.3.0)"]
 
 [[package]]
 name = "scikit-learn"
-version = "1.3.0"
+version = "1.3.1"
 description = "A set of python modules for machine learning and data mining"
 category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
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 ]
 
 [package.dependencies]
 joblib = ">=1.1.1"
-numpy = ">=1.17.3"
+numpy = ">=1.17.3,<2.0"
 scipy = ">=1.5.0"
 threadpoolctl = ">=2.0.0"
 
@@ -2329,20 +2385,43 @@ test = ["asv", "gmpy2", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeo
 
 [[package]]
 name = "setuptools"
-version = "68.1.0"
+version = "68.2.2"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
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+    {file = "setuptools-68.2.2.tar.gz", hash = "sha256:4ac1475276d2f1c48684874089fefcd83bd7162ddaafb81fac866ba0db282a87"},
 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (==0.8.3)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-hoverxref (<2)", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
 testing = ["build[virtualenv]", "filelock (>=3.4.0)", "flake8-2020", "ini2toml[lite] (>=0.9)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pip (>=19.1)", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff", "pytest-timeout", "pytest-xdist", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
-testing-integration = ["build[virtualenv]", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"]
+testing-integration = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "packaging (>=23.1)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"]
+
+[[package]]
+name = "setuptools-scm"
+version = "8.0.3"
+description = "the blessed package to manage your versions by scm tags"
+category = "main"
+optional = false
+python-versions = ">=3.8"
+files = [
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+]
+
+[package.dependencies]
+packaging = ">=20"
+setuptools = "*"
+tomli = {version = ">=1", markers = "python_version < \"3.11\""}
+typing-extensions = {version = "*", markers = "python_version < \"3.11\""}
+
+[package.extras]
+docs = ["entangled-cli[rich]", "mkdocs", "mkdocs-entangled-plugin", "mkdocs-material", "mkdocstrings[python]", "pygments"]
+rich = ["rich"]
+test = ["pytest", "rich", "virtualenv (>20)"]
 
 [[package]]
 name = "six"
@@ -2358,14 +2437,14 @@ files = [
 
 [[package]]
 name = "smmap"
-version = "5.0.0"
+version = "5.0.1"
 description = "A pure Python implementation of a sliding window memory map manager"
 category = "dev"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 files = [
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+    {file = "smmap-5.0.1-py3-none-any.whl", hash = "sha256:e6d8668fa5f93e706934a62d7b4db19c8d9eb8cf2adbb75ef1b675aa332b69da"},
+    {file = "smmap-5.0.1.tar.gz", hash = "sha256:dceeb6c0028fdb6734471eb07c0cd2aae706ccaecab45965ee83f11c8d3b1f62"},
 ]
 
 [[package]]
@@ -2382,14 +2461,14 @@ files = [
 
 [[package]]
 name = "spectrum-fundamentals"
-version = "0.4.2"
+version = "0.4.3"
 description = "Fundamentals public repo"
 category = "main"
 optional = false
-python-versions = ">=3.8.0,<4.0.0"
+python-versions = ">=3.8.0,<3.11.0"
 files = [
-    {file = "spectrum_fundamentals-0.4.2-py3-none-any.whl", hash = "sha256:c9e0a666885e014b62c087717a9194062eeabc2258b02cc4a854ec2d1fc372bc"},
-    {file = "spectrum_fundamentals-0.4.2.tar.gz", hash = "sha256:ee4b359cabe1127180babcbfcfa9dd8a4b36a8153fea6d10b3b1b683a319d651"},
+    {file = "spectrum_fundamentals-0.4.3-py3-none-any.whl", hash = "sha256:b17b8683332e368c873bb79e4a13f5f55fb0bf40710d1a0c19ebde3145b2ca1b"},
+    {file = "spectrum_fundamentals-0.4.3.tar.gz", hash = "sha256:998369ba47ff23faf72626db8d168d6f5712f62e3c02d75258b7330a9e96e02a"},
 ]
 
 [package.dependencies]
@@ -2404,21 +2483,21 @@ scikit-learn = ">=1.0,<2.0"
 
 [[package]]
 name = "sphinx"
-version = "6.2.1"
+version = "7.1.2"
 description = "Python documentation generator"
 category = "dev"
 optional = false
 python-versions = ">=3.8"
 files = [
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+    {file = "sphinx-7.1.2-py3-none-any.whl", hash = "sha256:d170a81825b2fcacb6dfd5a0d7f578a053e45d3f2b153fecc948c37344eb4cbe"},
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 ]
 
 [package.dependencies]
 alabaster = ">=0.7,<0.8"
 babel = ">=2.9"
 colorama = {version = ">=0.4.5", markers = "sys_platform == \"win32\""}
-docutils = ">=0.18.1,<0.20"
+docutils = ">=0.18.1,<0.21"
 imagesize = ">=1.3"
 importlib-metadata = {version = ">=4.8", markers = "python_version < \"3.10\""}
 Jinja2 = ">=3.0"
@@ -2460,14 +2539,14 @@ test = ["pytest", "pytest-cov"]
 
 [[package]]
 name = "sphinx-click"
-version = "4.4.0"
+version = "5.0.1"
 description = "Sphinx extension that automatically documents click applications"
 category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "sphinx-click-4.4.0.tar.gz", hash = "sha256:cc67692bd28f482c7f01531c61b64e9d2f069bfcf3d24cbbb51d4a84a749fa48"},
-    {file = "sphinx_click-4.4.0-py3-none-any.whl", hash = "sha256:2821c10a68fc9ee6ce7c92fad26540d8d8c8f45e6d7258f0e4fb7529ae8fab49"},
+    {file = "sphinx-click-5.0.1.tar.gz", hash = "sha256:fcc7df15e56e3ff17ebf446cdd316c2eb79580b37c49579fba11e5468802ef25"},
+    {file = "sphinx_click-5.0.1-py3-none-any.whl", hash = "sha256:31836ca22f746d3c26cbfdfe0c58edf0bca5783731a0b2e25bb6d59800bb75a1"},
 ]
 
 [package.dependencies]
@@ -2477,14 +2556,14 @@ sphinx = ">=2.0"
 
 [[package]]
 name = "sphinx-rtd-dark-mode"
-version = "1.2.4"
+version = "1.3.0"
 description = "Dark mode for the Sphinx Read the Docs theme."
 category = "dev"
 optional = false
 python-versions = ">=3.4"
 files = [
-    {file = "sphinx_rtd_dark_mode-1.2.4-py3-none-any.whl", hash = "sha256:1d97c1e4f7902fb77ae86adcf72926c3b0e48a300f93eeba49266da5aeed8a29"},
-    {file = "sphinx_rtd_dark_mode-1.2.4.tar.gz", hash = "sha256:935bc1f3e62fc76eadd7d2760ac7f48bab907a97e44beda749a48a2706aeed63"},
+    {file = "sphinx_rtd_dark_mode-1.3.0-py3-none-any.whl", hash = "sha256:478da69c72a2a2ed7665c1f633cc612039f5801df416fd5f7c4820c2fe08c9c5"},
+    {file = "sphinx_rtd_dark_mode-1.3.0.tar.gz", hash = "sha256:0272bf3d9ef620921adc67e5634a66969419e744da84ea18830adacfdb160ea8"},
 ]
 
 [package.dependencies]
@@ -2492,19 +2571,19 @@ sphinx-rtd-theme = "*"
 
 [[package]]
 name = "sphinx-rtd-theme"
-version = "1.2.2"
+version = "1.3.0"
 description = "Read the Docs theme for Sphinx"
 category = "dev"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
 files = [
-    {file = "sphinx_rtd_theme-1.2.2-py2.py3-none-any.whl", hash = "sha256:6a7e7d8af34eb8fc57d52a09c6b6b9c46ff44aea5951bc831eeb9245378f3689"},
-    {file = "sphinx_rtd_theme-1.2.2.tar.gz", hash = "sha256:01c5c5a72e2d025bd23d1f06c59a4831b06e6ce6c01fdd5ebfe9986c0a880fc7"},
+    {file = "sphinx_rtd_theme-1.3.0-py2.py3-none-any.whl", hash = "sha256:46ddef89cc2416a81ecfbeaceab1881948c014b1b6e4450b815311a89fb977b0"},
+    {file = "sphinx_rtd_theme-1.3.0.tar.gz", hash = "sha256:590b030c7abb9cf038ec053b95e5380b5c70d61591eb0b552063fbe7c41f0931"},
 ]
 
 [package.dependencies]
 docutils = "<0.19"
-sphinx = ">=1.6,<7"
+sphinx = ">=1.6,<8"
 sphinxcontrib-jquery = ">=4,<5"
 
 [package.extras]
@@ -2701,7 +2780,7 @@ files = [
 name = "tomli"
 version = "2.0.1"
 description = "A lil' TOML parser"
-category = "dev"
+category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
@@ -2753,14 +2832,14 @@ telegram = ["requests"]
 
 [[package]]
 name = "typeguard"
-version = "4.1.1"
+version = "4.1.5"
 description = "Run-time type checker for Python"
 category = "dev"
 optional = false
-python-versions = ">=3.7.4"
+python-versions = ">=3.8"
 files = [
-    {file = "typeguard-4.1.1-py3-none-any.whl", hash = "sha256:8145b40eaac14d2cd9656a40a763e8928c3519a2d39c43b6478ca20e513fad83"},
-    {file = "typeguard-4.1.1.tar.gz", hash = "sha256:278ad7a974c9e6325037751fdffc470b9b0212d282c1746ecc452235922e3602"},
+    {file = "typeguard-4.1.5-py3-none-any.whl", hash = "sha256:8923e55f8873caec136c892c3bed1f676eae7be57cdb94819281b3d3bc9c0953"},
+    {file = "typeguard-4.1.5.tar.gz", hash = "sha256:ea0a113bbc111bcffc90789ebb215625c963411f7096a7e9062d4e4630c155fd"},
 ]
 
 [package.dependencies]
@@ -2768,8 +2847,8 @@ importlib-metadata = {version = ">=3.6", markers = "python_version < \"3.10\""}
 typing-extensions = {version = ">=4.7.0", markers = "python_version < \"3.12\""}
 
 [package.extras]
-doc = ["Sphinx (<7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme"]
-test = ["mypy (>=1.2.0)", "pytest (>=7)"]
+doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)"]
+test = ["coverage[toml] (>=7)", "mypy (>=1.2.0)", "pytest (>=7)"]
 
 [[package]]
 name = "types-attrs"
@@ -2796,14 +2875,14 @@ files = [
 
 [[package]]
 name = "types-requests"
-version = "2.31.0.2"
+version = "2.31.0.3"
 description = "Typing stubs for requests"
 category = "dev"
 optional = false
 python-versions = "*"
 files = [
-    {file = "types-requests-2.31.0.2.tar.gz", hash = "sha256:6aa3f7faf0ea52d728bb18c0a0d1522d9bfd8c72d26ff6f61bfc3d06a411cf40"},
-    {file = "types_requests-2.31.0.2-py3-none-any.whl", hash = "sha256:56d181c85b5925cbc59f4489a57e72a8b2166f18273fd8ba7b6fe0c0b986f12a"},
+    {file = "types-requests-2.31.0.3.tar.gz", hash = "sha256:d5d7a08965fca12bedf716eaf5430c6e3d0da9f3164a1dba2a7f3885f9ebe3c0"},
+    {file = "types_requests-2.31.0.3-py3-none-any.whl", hash = "sha256:938f51653c757716aeca5d72c405c5e2befad8b0d330e3b385ce7f148e1b10dc"},
 ]
 
 [package.dependencies]
@@ -2823,26 +2902,26 @@ files = [
 
 [[package]]
 name = "typing-extensions"
-version = "4.7.1"
-description = "Backported and Experimental Type Hints for Python 3.7+"
+version = "4.8.0"
+description = "Backported and Experimental Type Hints for Python 3.8+"
 category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "typing_extensions-4.7.1-py3-none-any.whl", hash = "sha256:440d5dd3af93b060174bf433bccd69b0babc3b15b1a8dca43789fd7f61514b36"},
-    {file = "typing_extensions-4.7.1.tar.gz", hash = "sha256:b75ddc264f0ba5615db7ba217daeb99701ad295353c45f9e95963337ceeeffb2"},
+    {file = "typing_extensions-4.8.0-py3-none-any.whl", hash = "sha256:8f92fc8806f9a6b641eaa5318da32b44d401efaac0f6678c9bc448ba3605faa0"},
+    {file = "typing_extensions-4.8.0.tar.gz", hash = "sha256:df8e4339e9cb77357558cbdbceca33c303714cf861d1eef15e1070055ae8b7ef"},
 ]
 
 [[package]]
 name = "urllib3"
-version = "2.0.4"
+version = "2.0.5"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "urllib3-2.0.4-py3-none-any.whl", hash = "sha256:de7df1803967d2c2a98e4b11bb7d6bd9210474c46e8a0401514e3a42a75ebde4"},
-    {file = "urllib3-2.0.4.tar.gz", hash = "sha256:8d22f86aae8ef5e410d4f539fde9ce6b2113a001bb4d189e0aed70642d602b11"},
+    {file = "urllib3-2.0.5-py3-none-any.whl", hash = "sha256:ef16afa8ba34a1f989db38e1dbbe0c302e4289a47856990d0682e374563ce35e"},
+    {file = "urllib3-2.0.5.tar.gz", hash = "sha256:13abf37382ea2ce6fb744d4dad67838eec857c9f4f57009891805e0b5e123594"},
 ]
 
 [package.extras]
@@ -2853,14 +2932,14 @@ zstd = ["zstandard (>=0.18.0)"]
 
 [[package]]
 name = "virtualenv"
-version = "20.24.3"
+version = "20.24.5"
 description = "Virtual Python Environment builder"
 category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "virtualenv-20.24.3-py3-none-any.whl", hash = "sha256:95a6e9398b4967fbcb5fef2acec5efaf9aa4972049d9ae41f95e0972a683fd02"},
-    {file = "virtualenv-20.24.3.tar.gz", hash = "sha256:e5c3b4ce817b0b328af041506a2a299418c98747c4b1e68cb7527e74ced23efc"},
+    {file = "virtualenv-20.24.5-py3-none-any.whl", hash = "sha256:b80039f280f4919c77b30f1c23294ae357c4c8701042086e3fc005963e4e537b"},
+    {file = "virtualenv-20.24.5.tar.gz", hash = "sha256:e8361967f6da6fbdf1426483bfe9fca8287c242ac0bc30429905721cefbff752"},
 ]
 
 [package.dependencies]
@@ -2869,7 +2948,7 @@ filelock = ">=3.12.2,<4"
 platformdirs = ">=3.9.1,<4"
 
 [package.extras]
-docs = ["furo (>=2023.5.20)", "proselint (>=0.13)", "sphinx (>=7.0.1)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"]
+docs = ["furo (>=2023.7.26)", "proselint (>=0.13)", "sphinx (>=7.1.2)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"]
 test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8)", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10)"]
 
 [[package]]
@@ -2904,21 +2983,21 @@ tests-strict = ["codecov (==2.0.15)", "pytest (==4.6.0)", "pytest (==4.6.0)", "p
 
 [[package]]
 name = "zipp"
-version = "3.16.2"
+version = "3.17.0"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 category = "main"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "zipp-3.16.2-py3-none-any.whl", hash = "sha256:679e51dd4403591b2d6838a48de3d283f3d188412a9782faadf845f298736ba0"},
-    {file = "zipp-3.16.2.tar.gz", hash = "sha256:ebc15946aa78bd63458992fc81ec3b6f7b1e92d51c35e6de1c3804e73b799147"},
+    {file = "zipp-3.17.0-py3-none-any.whl", hash = "sha256:0e923e726174922dce09c53c59ad483ff7bbb8e572e00c7f7c46b88556409f31"},
+    {file = "zipp-3.17.0.tar.gz", hash = "sha256:84e64a1c28cf7e91ed2078bb8cc8c259cb19b76942096c8d7b84947690cabaf0"},
 ]
 
 [package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-lint"]
 testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy (>=0.9.1)", "pytest-ruff"]
 
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.8.0,<3.11.0"
-content-hash = "d4df48134c536c8ef628f82d84b5227ff00795b9bb8b1a101975229fc56c71c7"
+content-hash = "5c60fd12a66022e2a593a7ce2d7e9b79171300c05ef479c9dbbdfb8216fb1e5a"
diff --git a/pyproject.toml b/pyproject.toml
index b5742a9..9fb27b3 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "spectrum_io"
-version = "0.3.1"  # <<COOKIETEMPLE_FORCE_BUMP>>
+version = "0.3.2"  # <<COOKIETEMPLE_FORCE_BUMP>>
 description = "IO related functionalities for oktoberfest."
 authors = ["Mario Picciani <mario.picciani@tum.de>"]
 license = "MIT"
@@ -30,7 +30,7 @@ pymzml = "^2.5.0"
 pyteomics = "^4.3.3"
 lxml= '^4.5.2'
 tables = "^3.6.1"
-spectrum-fundamentals = "^0.4.0"
+spectrum-fundamentals = ">=0.4.3,<0.5.0"
 
 [tool.poetry.dev-dependencies]
 pytest = ">=6.2.3"
@@ -99,3 +99,5 @@ requires = [
     "wheel"
 ]
 build-backend = "poetry.core.masonry.api"
+
+[tool.setuptools_scm]
diff --git a/spectrum_io/__init__.py b/spectrum_io/__init__.py
index 0c30ef9..09adc59 100644
--- a/spectrum_io/__init__.py
+++ b/spectrum_io/__init__.py
@@ -2,7 +2,7 @@
 
 __author__ = "Mario Picciani"
 __email__ = "mario.picciani@tum.de"
-__version__ = "0.3.1"
+__version__ = "0.3.2"
 
 import logging
 import logging.handlers
diff --git a/spectrum_io/__main__.py b/spectrum_io/__main__.py
index 2d1358a..59c34a2 100644
--- a/spectrum_io/__main__.py
+++ b/spectrum_io/__main__.py
@@ -5,7 +5,7 @@
 
 
 @click.command()
-@click.version_option(version="0.3.1", message=click.style("spectrum_io Version: 0.3.1"))
+@click.version_option(version="0.3.2", message=click.style("spectrum_io Version: 0.3.2"))
 def main() -> None:
     """spectrum_io."""
 
diff --git a/spectrum_io/search_result/maxquant.py b/spectrum_io/search_result/maxquant.py
index 49533d2..e165e71 100644
--- a/spectrum_io/search_result/maxquant.py
+++ b/spectrum_io/search_result/maxquant.py
@@ -82,7 +82,7 @@ def update_columns_for_prosit(df: pd.DataFrame, tmt_labeled: str) -> pd.DataFram
             logger.info("Adding TMT fixed modifications")
             df["MODIFIED_SEQUENCE"] = maxquant_to_internal(
                 df["MODIFIED_SEQUENCE"].to_numpy(),
-                fixed_mods={"C": "C[UNIMOD:4]", "^_": f"_{unimod_tag}", "K": f"K{unimod_tag}"},
+                fixed_mods={"C": "C[UNIMOD:4]", "^_": f"_{unimod_tag}-", "K": f"K{unimod_tag}"},
             )
             df["MASS"] = df.apply(lambda x: MaxQuant.add_tmt_mod(x.MASS, x.MODIFIED_SEQUENCE, unimod_tag), axis=1)
             if "msa" in tmt_labeled:
diff --git a/spectrum_io/spectral_library/__init__.py b/spectrum_io/spectral_library/__init__.py
index 7742f8a..bffad66 100644
--- a/spectrum_io/spectral_library/__init__.py
+++ b/spectrum_io/spectral_library/__init__.py
@@ -4,6 +4,7 @@
 from . import digest
 from .dlib import DLib
 from .msp import MSP
+from .spectral_library import SpectralLibrary
 from .spectronaut import Spectronaut
 
 logger = logging.getLogger(__name__)
diff --git a/spectrum_io/spectral_library/dlib.py b/spectrum_io/spectral_library/dlib.py
index 2ede36e..fe30db0 100644
--- a/spectrum_io/spectral_library/dlib.py
+++ b/spectrum_io/spectral_library/dlib.py
@@ -5,6 +5,7 @@
 
 import numpy as np
 import pandas as pd
+from spectrum_fundamentals.constants import PARTICLE_MASSES
 from spectrum_fundamentals.mod_string import internal_to_mod_mass, internal_without_mods
 
 from .spectral_library import SpectralLibrary
@@ -25,62 +26,9 @@
 class DLib(SpectralLibrary):
     """Main to init a DLib obj."""
 
-    def __init__(
-        self,
-        precursor_mz: Union[List[float], np.ndarray],
-        precursor_charges: Union[List[int], np.ndarray],
-        modified_sequences: List[str],
-        retention_times: Union[List[float], np.ndarray],
-        fragmentmz: List[np.ndarray],
-        intensities: List[np.ndarray],
-        path: Union[str, Path],
-        min_intensity_threshold: Optional[float] = 0.05,
-    ):
+    def _calculate_masked_values(self, fragmentmz: List[np.ndarray], intensities: List[np.ndarray]):
         """
-        Initializer for the DLib class.
-
-        :param precursor_mz: precursor mass to charge ratios
-        :param precursor_charges: precurosr charges
-        :param modified_sequences: modified sequences in internal format
-        :param retention_times: retention times
-        :param fragmentmz: mass to charge ratio of fragments
-        :param intensities: intensities
-        :param path: path to the file the dlib is written to
-        :param min_intensity_threshold: minimal intensity required when masking fragmentmz and intensities
-        """
-        self.path = path
-        self.create_database(self.path)
-
-        # gather all values for the entries table and create pandas DataFrame
-        masked_values = self._calculate_masked_values(fragmentmz, intensities, min_intensity_threshold)
-        mass_mod_sequences = internal_to_mod_mass(modified_sequences)
-        sequences = internal_without_mods(modified_sequences)
-        data_list = [*masked_values, precursor_charges, mass_mod_sequences, sequences, retention_times, precursor_mz]
-        self.entries = pd.DataFrame(dict(zip(DLIB_COL_NAMES, data_list)))
-
-        # hardcoded entries that we currently not use.
-        # Visit https://bitbucket.org/searleb/encyclopedia/wiki/EncyclopeDIA%20File%20Formats for dlib specs
-        self.entries["Copies"] = 1  # this is hardcorded for now and unused
-        self.entries["Score"] = 0
-        self.entries["CorrelationEncodedLength"] = None
-        self.entries["CorrelationArray"] = None
-        self.entries["RTInSecondsStart"] = None
-        self.entries["RTInSecondsStop"] = None
-        self.entries["MedianChromatogramEncodedLength"] = None
-        self.entries["MedianChromatogramArray"] = None
-        self.entries["SourceFile"] = "Prosit"
-
-        # gather all values for the p2p table and create pandas DataFrame
-        self.p2p = pd.DataFrame({"PeptideSeq": sequences, "isDecoy": False, "ProteinAccession": "unknown"})
-
-    @staticmethod
-    def _calculate_masked_values(
-        fragmentmz: List[np.ndarray],
-        intensities: List[np.ndarray],
-        intensity_min_threshold: Optional[float] = 0.05,
-    ):
-        """
-        Internal function called during __init__ that masks, filters, byte encodes, swaps and compresses fragmentmz \
+        Internal function that masks, filters, byte encodes, swaps and compresses fragmentmz \
         and intensities.
 
         This will produce the data for the following columns in this order:
@@ -90,7 +38,6 @@ def _calculate_masked_values(
             - 'IntensityEncodedLength'.
         :param fragmentmz: fragmentmz provided in __init__
         :param intensities: intensities provided in __init__
-        :param intensity_min_threshold: minimum threshold for tge intensity; default=0.05
         :return: 4 lists as described above
         """
         mz_bytes_list = []
@@ -99,8 +46,7 @@ def _calculate_masked_values(
         i_lengths = []
         for mz, i in zip(fragmentmz, intensities):
             # mask to only existing peaks
-            mask = i >= intensity_min_threshold
-            print(mask)
+            mask = i >= self.min_intensity_threshold
             sort_index = np.argsort(mz[mask])
             masked_mz_ordered = mz[mask][sort_index]
             masked_i_ordered = i[mask][sort_index]
@@ -165,14 +111,10 @@ def create_database(path: Union[str, Path]):
         c.execute(sql_insert_meta, ["staleProteinMapping", "true"])
         conn.commit()
 
-    def write(self, chunksize: Optional[Union[None, int]]):
-        """
-        Writes the entries ad p2p table to file.
-
-        :param chunksize: optional size of chunks to insert at once
-        """
-        self._write_entries(index=False, if_exists="append", method="multi", chunksize=chunksize)
-        self._write_p2p(index=False, if_exists="append", method="multi", chunksize=chunksize)
+    def write(self):
+        """Writes the entries ad p2p table to file."""
+        self._write_entries(index=False, if_exists="append", method="multi", chunksize=self.chunksize)
+        self._write_p2p(index=False, if_exists="append", method="multi", chunksize=self.chunksize)
 
     def _write_entries(self, *args, **kwargs):
         """
@@ -181,7 +123,7 @@ def _write_entries(self, *args, **kwargs):
         :param args: forwarded to pandas.to_sql
         :param kwargs: forwarded to pandas.to_sql
         """
-        conn = sqlite3.connect(self.path)
+        conn = sqlite3.connect(self.out_path)
         self.entries.to_sql(name="entries", con=conn, *args, **kwargs)
         conn.commit()
 
@@ -192,10 +134,50 @@ def _write_p2p(self, *args, **kwargs):
         :param args: forwarded to pandas.to_sql
         :param kwargs: forwarded to pandas.to_sql
         """
-        conn = sqlite3.connect(self.path)
+        conn = sqlite3.connect(self.out_path)
         self.p2p.to_sql(name="peptidetoprotein", con=conn, *args, **kwargs)
         conn.commit()
 
     def prepare_spectrum(self):
-        """Prepare spectrum."""
-        pass
+        """Converts grpc output and metadata dataframe into dlib format."""
+        # precursor_mz: Union[List[float], np.ndarray],
+        # precursor_charges: Union[List[int], np.ndarray],
+        # modified_sequences: List[str],
+        # retention_times: Union[List[float], np.ndarray],
+        # fragmentmz: List[np.ndarray],
+        # intensities: List[np.ndarray],
+
+        intensities = self.grpc_output[list(self.grpc_output)[0]]["intensity"]
+        fragment_mz = self.grpc_output[list(self.grpc_output)[0]]["fragmentmz"]
+        # annotation = self.grpc_output[list(self.grpc_output)[0]]["annotation"]
+        irt = self.grpc_output[list(self.grpc_output)[1]]
+        retention_times = irt.flatten()
+        modified_sequences = self.spectra_input["MODIFIED_SEQUENCE"]
+
+        precursor_charges = self.spectra_input["PRECURSOR_CHARGE"]
+        precursor_masses = self.spectra_input["MASS"]
+        precursor_mz = (precursor_masses + (precursor_charges * PARTICLE_MASSES["PROTON"])) / precursor_charges
+
+        self.create_database(self.out_path)
+
+        # gather all values for the entries table and create pandas DataFrame
+        masked_values = self._calculate_masked_values(fragment_mz, intensities)
+        mass_mod_sequences = internal_to_mod_mass(modified_sequences)
+        sequences = internal_without_mods(modified_sequences)
+        data_list = [*masked_values, precursor_charges, mass_mod_sequences, sequences, retention_times, precursor_mz]
+        self.entries = pd.DataFrame(dict(zip(DLIB_COL_NAMES, data_list)))
+
+        # hardcoded entries that we currently not use.
+        # Visit https://bitbucket.org/searleb/encyclopedia/wiki/EncyclopeDIA%20File%20Formats for dlib specs
+        self.entries["Copies"] = 1  # this is hardcorded for now and unused
+        self.entries["Score"] = 0
+        self.entries["CorrelationEncodedLength"] = None
+        self.entries["CorrelationArray"] = None
+        self.entries["RTInSecondsStart"] = None
+        self.entries["RTInSecondsStop"] = None
+        self.entries["MedianChromatogramEncodedLength"] = None
+        self.entries["MedianChromatogramArray"] = None
+        self.entries["SourceFile"] = "Prosit"
+
+        # gather all values for the p2p table and create pandas DataFrame
+        self.p2p = pd.DataFrame({"PeptideSeq": sequences, "isDecoy": False, "ProteinAccession": "unknown"})
diff --git a/spectrum_io/spectral_library/spectral_library.py b/spectrum_io/spectral_library/spectral_library.py
index 4746519..7218f5d 100644
--- a/spectrum_io/spectral_library/spectral_library.py
+++ b/spectrum_io/spectral_library/spectral_library.py
@@ -9,25 +9,36 @@
 class SpectralLibrary:
     """Main to initialze a SpectralLibrary obj."""
 
-    def __init__(self, input_dataframe: pd.DataFrame, grpc_dict: dict, output_path: Union[str, Path]):
+    def __init__(
+        self,
+        input_dataframe: pd.DataFrame,
+        grpc_dict: dict,
+        output_path: Union[str, Path],
+        min_intensity_threshold: Optional[float] = 0.05,
+        chunksize: Optional[int] = None,
+    ):
         """
         Initialize a SpectralLibrary obj.
 
         :param input_dataframe: dataframe of sequences, charges, and masses of all library peptides
         :param grpc_dict: GRPC client output dictionary with spectrum, irt, and proteotypicity prediction
         :param output_path: path to output file including file name
+        :param min_intensity_threshold: optional filter for low intensity peaks
+        :param chunksize: optional chunksize for dlib
         """
         if isinstance(output_path, str):
             output_path = Path(output_path)
         self.spectra_input = input_dataframe
         self.grpc_output = grpc_dict
         self.out_path = output_path
+        self.min_intensity_threshold = min_intensity_threshold
+        self.chunksize = chunksize
 
     def load(self):
         """Load predictions from hdf5 file."""
 
     @abstractmethod
-    def write(self, chunksize: Optional[Union[None, int]]):
+    def write(self):
         """Write predictions."""
         pass
 
diff --git a/tests/unit_tests/test_maxquant.py b/tests/unit_tests/test_maxquant.py
index af45d6c..bd7242e 100644
--- a/tests/unit_tests/test_maxquant.py
+++ b/tests/unit_tests/test_maxquant.py
@@ -62,8 +62,8 @@ def test_update_columns_tmt(self, maxquant_df: pd.DataFrame):
         :param maxquant_df: maxquant df as pd.DataFrame
         """
         prosit_df = mq.MaxQuant.update_columns_for_prosit(maxquant_df, tmt_labeled="tmt")
-        assert prosit_df["MODIFIED_SEQUENCE"][0] == "[UNIMOD:737]DS[UNIMOD:21]DS[UNIMOD:21]WDADAFSVEDPVRK[UNIMOD:737]"
-        assert prosit_df["MODIFIED_SEQUENCE"][3] == "[UNIMOD:737]SS[UNIMOD:21]PTPES[UNIMOD:21]PTMLTK[UNIMOD:737]"
+        assert prosit_df["MODIFIED_SEQUENCE"][0] == "[UNIMOD:737]-DS[UNIMOD:21]DS[UNIMOD:21]WDADAFSVEDPVRK[UNIMOD:737]"
+        assert prosit_df["MODIFIED_SEQUENCE"][3] == "[UNIMOD:737]-SS[UNIMOD:21]PTPES[UNIMOD:21]PTMLTK[UNIMOD:737]"
 
         assert prosit_df["MASS"][0] == 1.0 + 2 * 229.162932
         assert prosit_df["MASS"][3] == 2.0 + 2 * 229.162932
@@ -76,9 +76,9 @@ def test_update_columns_tmt_msa(self, maxquant_df: pd.DataFrame):
         """
         prosit_df = mq.MaxQuant.update_columns_for_prosit(maxquant_df, tmt_labeled="tmt_msa")
         assert (
-            prosit_df["MODIFIED_SEQUENCE_MSA"][0] == "[UNIMOD:737]DS[UNIMOD:23]DS[UNIMOD:23]WDADAFSVEDPVRK[UNIMOD:737]"
+            prosit_df["MODIFIED_SEQUENCE_MSA"][0] == "[UNIMOD:737]-DS[UNIMOD:23]DS[UNIMOD:23]WDADAFSVEDPVRK[UNIMOD:737]"
         )
-        assert prosit_df["MODIFIED_SEQUENCE_MSA"][3] == "[UNIMOD:737]SS[UNIMOD:23]PTPES[UNIMOD:23]PTMLTK[UNIMOD:737]"
+        assert prosit_df["MODIFIED_SEQUENCE_MSA"][3] == "[UNIMOD:737]-SS[UNIMOD:23]PTPES[UNIMOD:23]PTMLTK[UNIMOD:737]"
 
     def test_filter_valid_prosit_sequences(self, invalid_df: pd.DataFrame):
         """Test filter_valid_prosit_sequences."""