diff --git a/requirements.txt b/requirements.txt index bec5483..ce2f90d 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,43 +1,132 @@ -alphatims==1.0.8 ; python_version >= "3.9" and python_full_version < "3.11.0" +alabaster==0.7.16 ; python_version >= "3.9" and python_full_version < "3.11.0" +alphatims==1.0.8 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +annotated-types==0.7.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +anyio==4.4.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +attrs==23.2.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +authlib==1.3.1 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +babel==2.15.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +bandit==1.7.9 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +black==24.4.2 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +certifi==2024.7.4 ; python_version >= "3.9" and python_full_version < "3.11.0" +cffi==1.16.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" and platform_python_implementation != "PyPy" +cfgv==3.4.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +charset-normalizer==3.3.2 ; python_version >= "3.9" and python_full_version < "3.11.0" click==8.1.7 ; python_version >= "3.9" and python_full_version < "3.11.0" -colorama==0.4.6 ; python_version >= "3.9" and python_full_version < "3.11.0" and platform_system == "Windows" -contourpy==1.1.1 ; python_version >= "3.9" and python_full_version < "3.11.0" +colorama==0.4.6 ; python_version >= "3.9" and python_full_version < "3.11.0" +contourpy==1.2.1 ; python_version >= "3.9" and python_full_version < "3.11.0" +coverage[toml]==7.6.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +cryptography==43.0.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" cycler==0.12.1 ; python_version >= "3.9" and python_full_version < "3.11.0" -fonttools==4.51.0 ; python_version >= "3.9" and python_full_version < "3.11.0" -h5py==3.11.0 ; python_version >= "3.9" and python_full_version < "3.11.0" -importlib-metadata==7.1.0 ; python_version >= "3.9" and python_version < "3.9" +darglint==1.8.1 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +distlib==0.3.8 ; python_version >= "3.9" and python_full_version < "3.11.0" +docutils==0.20.1 ; python_version >= "3.9" and python_full_version < "3.11.0" +dparse==0.6.4b0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +exceptiongroup==1.2.2 ; python_version >= "3.9" and python_version < "3.11" +filelock==3.12.4 ; python_version >= "3.9" and python_full_version < "3.11.0" +flake8-bandit==4.1.1 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +flake8-bugbear==24.4.26 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +flake8-docstrings==1.7.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +flake8-rst-docstrings==0.3.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +flake8==7.1.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +fonttools==4.53.1 ; python_version >= "3.9" and python_full_version < "3.11.0" +h11==0.14.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +h5py==3.11.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +identify==2.6.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +idna==3.7 ; python_version >= "3.9" and python_full_version < "3.11.0" +imagesize==1.4.1 ; python_version >= "3.9" and python_full_version < "3.11.0" +importlib-metadata==8.2.0 ; python_version >= "3.9" and python_version < "3.10" importlib-resources==6.4.0 ; python_version >= "3.9" and python_version < "3.10" -joblib==1.4.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +iniconfig==2.0.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +jinja2==3.1.4 ; python_version >= "3.9" and python_full_version < "3.11.0" +joblib==1.4.2 ; python_version >= "3.9" and python_full_version < "3.11.0" kiwisolver==1.4.5 ; python_version >= "3.9" and python_full_version < "3.11.0" -llvmlite==0.41.1 ; python_version >= "3.9" and python_full_version < "3.11.0" -lxml==4.9.4 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" -markdown-it-py==3.0.0 ; python_version >= "3.9" and python_full_version < "3.11.0" -matplotlib==3.7.5 ; python_version >= "3.9" and python_full_version < "3.11.0" -mdurl==0.1.2 ; python_version >= "3.9" and python_full_version < "3.11.0" +llvmlite==0.43.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +lxml==5.2.2 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +markdown-it-py==3.0.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +markupsafe==2.1.5 ; python_version >= "3.9" and python_full_version < "3.11.0" +marshmallow==3.21.3 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +matplotlib==3.9.1 ; python_version >= "3.9" and python_full_version < "3.11.0" +mccabe==0.7.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +mdurl==0.1.2 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" moepy==1.1.4 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" -numba==0.58.1 ; python_version >= "3.9" and python_full_version < "3.11.0" +mypy-extensions==1.0.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +mypy==1.11.1 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +nodeenv==1.9.1 ; python_version >= "3.9" and python_full_version < "3.11.0" +numba==0.60.0 ; python_version >= "3.9" and python_full_version < "3.11.0" numpy==1.24.4 ; python_version >= "3.9" and python_full_version < "3.11.0" -packaging==24.0 ; python_version >= "3.9" and python_full_version < "3.11.0" -pandas==1.5.3 ; python_version >= "3.9" and python_full_version < "3.11.0" -pillow==10.3.0 ; python_version >= "3.9" and python_full_version < "3.11.0" -psutil==5.9.8 ; python_version >= "3.9" and python_full_version < "3.11.0" -pyarrow==16.1.0 ; python_full_version >= "3.9" and python_full_version < "3.11.0" -pygments==2.17.2 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" -pymzml==2.5.9 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +packaging==24.1 ; python_version >= "3.9" and python_full_version < "3.11.0" +pandas==1.5.3 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +pathspec==0.12.1 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +pbr==6.0.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +pep8-naming==0.14.1 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +pillow==10.4.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +platformdirs==4.2.2 ; python_version >= "3.9" and python_full_version < "3.11.0" +pluggy==1.5.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +pre-commit-hooks==4.6.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +pre-commit==3.8.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +psutil==6.0.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +pyarrow==17.0.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +pycodestyle==2.12.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +pycparser==2.22 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" and platform_python_implementation != "PyPy" +pydantic-core==2.20.1 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +pydantic==2.8.2 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +pydocstyle==6.3.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +pyflakes==3.2.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +pygments==2.18.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +pymzml==2.5.10 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" pyparsing==3.1.2 ; python_version >= "3.9" and python_full_version < "3.11.0" -pyteomics==4.7.2 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +pyteomics==4.7.3 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +pytest==8.3.2 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" python-dateutil==2.9.0.post0 ; python_version >= "3.9" and python_full_version < "3.11.0" -pytz==2024.1 ; python_version >= "3.9" and python_full_version < "3.11.0" -pyyaml==6.0.1 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" -pyzstd==0.15.10 ; python_version >= "3.9" and python_full_version < "3.11.0" -regex==2024.4.16 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +pytz==2024.1 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +pyupgrade==3.17.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +pyyaml==6.0.1 ; python_version >= "3.9" and python_full_version < "3.11.0" +pyzstd==0.16.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +regex==2024.7.24 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +requests==2.32.3 ; python_version >= "3.9" and python_full_version < "3.11.0" +restructuredtext-lint==1.4.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" rich==13.7.1 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" -scikit-learn==1.3.2 ; python_version >= "3.9" and python_full_version < "3.11.0" -scipy==1.10.1 ; python_version >= "3.9" and python_full_version < "3.11.0" +ruamel-yaml-clib==0.2.8 ; platform_python_implementation == "CPython" and python_full_version < "3.11.0" and python_full_version >= "3.9.0" +ruamel-yaml==0.18.6 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +safety-schemas==0.0.2 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +safety==3.2.4 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +scikit-learn==1.5.1 ; python_version >= "3.9" and python_full_version < "3.11.0" +scipy==1.13.1 ; python_version >= "3.9" and python_full_version < "3.11.0" +setuptools==72.1.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +shellingham==1.5.4 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" six==1.16.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +sniffio==1.3.1 ; python_version >= "3.9" and python_full_version < "3.11.0" +snowballstemmer==2.2.0 ; python_version >= "3.9" and python_full_version < "3.11.0" sortedcontainers==2.4.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" -spectrum-fundamentals==0.5.2 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" -threadpoolctl==3.4.0 ; python_version >= "3.9" and python_full_version < "3.11.0" -tqdm==4.66.2 ; python_version >= "3.9" and python_full_version < "3.11.0" -typing-extensions==4.11.0 ; python_version >= "3.9" and python_version < "3.9" -zipp==3.18.1 ; python_version >= "3.9" and python_version < "3.10" +spectrum-fundamentals==0.7.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +sphinx-autobuild==2024.4.16 ; python_version >= "3.9" and python_full_version < "3.11.0" +sphinx-click==6.0.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +sphinx-rtd-dark-mode==1.3.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +sphinx-rtd-theme==2.0.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +sphinx==7.4.7 ; python_version >= "3.9" and python_full_version < "3.11.0" +sphinxcontrib-applehelp==2.0.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +sphinxcontrib-devhelp==2.0.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +sphinxcontrib-htmlhelp==2.1.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +sphinxcontrib-jquery==4.1 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +sphinxcontrib-jsmath==1.0.1 ; python_version >= "3.9" and python_full_version < "3.11.0" +sphinxcontrib-qthelp==2.0.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +sphinxcontrib-serializinghtml==2.0.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +starlette==0.38.2 ; python_version >= "3.9" and python_full_version < "3.11.0" +stevedore==5.2.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +threadpoolctl==3.5.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +tokenize-rt==5.2.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +tomli==2.0.1 ; python_version >= "3.9" and python_version < "3.11" +tqdm==4.66.4 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +typeguard==4.3.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +typer==0.12.3 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +types-attrs==19.1.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +types-pkg-resources==0.1.3 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +types-requests==2.32.0.20240712 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +typing-extensions==4.12.2 ; python_version >= "3.9" and python_version < "3.11" +urllib3==2.2.2 ; python_version >= "3.9" and python_full_version < "3.11.0" +uvicorn==0.30.4 ; python_version >= "3.9" and python_full_version < "3.11.0" +virtualenv==20.26.3 ; python_version >= "3.9" and python_full_version < "3.11.0" +watchfiles==0.22.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +websockets==12.0 ; python_version >= "3.9" and python_full_version < "3.11.0" +xdoctest[colors]==1.1.6 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" +zipp==3.19.2 ; python_version >= "3.9" and python_version < "3.10"