diff --git a/poetry.lock b/poetry.lock
index a30283a..a49f3ef 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -292,78 +292,62 @@ files = [
 
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 [package.dependencies]
 numpy = ">=1.16"
 
 [package.extras]
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 docs = ["furo", "sphinx-copybutton"]
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-test = ["Pillow", "matplotlib", "pytest"]
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+test-no-images = ["pytest", "pytest-cov", "wurlitzer"]
 
 [[package]]
 name = "coverage"
@@ -577,19 +561,19 @@ test = ["pytest (>=6)"]
 
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 [[package]]
 name = "flake8"
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 [package.extras]
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 ]
 
 [package.dependencies]
-numpy = ">=1.14.5"
+numpy = ">=1.17.3"
 
 [[package]]
 name = "identify"
@@ -814,14 +826,14 @@ files = [
 
 [[package]]
 name = "importlib-metadata"
-version = "6.6.0"
+version = "6.7.0"
 description = "Read metadata from Python packages"
 category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
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 ]
 
 [package.dependencies]
@@ -830,7 +842,7 @@ zipp = ">=0.5"
 [package.extras]
 docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"]
 perf = ["ipython"]
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+testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)", "pytest-ruff"]
 
 [[package]]
 name = "importlib-resources"
@@ -1082,14 +1094,14 @@ source = ["Cython (>=0.29.7)"]
 
 [[package]]
 name = "markdown-it-py"
-version = "2.2.0"
+version = "3.0.0"
 description = "Python port of markdown-it. Markdown parsing, done right!"
 category = "main"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
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 [package.dependencies]
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 linkify = ["linkify-it-py (>=1,<3)"]
 plugins = ["mdit-py-plugins"]
 profiling = ["gprof2dot"]
-rtd = ["attrs", "myst-parser", "pyyaml", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinx_book_theme"]
+rtd = ["jupyter_sphinx", "mdit-py-plugins", "myst-parser", "pyyaml", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinx_book_theme"]
 testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
 
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-version = "2.1.2"
+version = "2.1.3"
 description = "Safely add untrusted strings to HTML/XML markup."
 category = "dev"
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 python-versions = ">=3.7"
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 [package.dependencies]
@@ -1686,30 +1698,30 @@ tests = ["check-manifest", "coverage", "defusedxml", "markdown2", "olefile", "pa
 
 [[package]]
 name = "platformdirs"
-version = "3.5.1"
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 description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
 category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
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 [package.extras]
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 category = "dev"
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 [package.extras]
@@ -1718,14 +1730,14 @@ testing = ["pytest", "pytest-benchmark"]
 
 [[package]]
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-version = "3.3.2"
+version = "3.3.3"
 description = "A framework for managing and maintaining multi-language pre-commit hooks."
 category = "dev"
 optional = false
 python-versions = ">=3.8"
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@@ -1844,14 +1856,14 @@ pynumpress = ["pynumpress (>=0.0.4)"]
 
 [[package]]
 name = "pyparsing"
-version = "3.0.9"
+version = "3.1.0"
 description = "pyparsing module - Classes and methods to define and execute parsing grammars"
 category = "main"
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 python-versions = ">=3.6.8"
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 ]
 
 [package.extras]
@@ -1882,14 +1894,14 @@ xml = ["lxml", "numpy"]
 
 [[package]]
 name = "pytest"
-version = "7.3.1"
+version = "7.4.0"
 description = "pytest: simple powerful testing with Python"
 category = "dev"
 optional = false
 python-versions = ">=3.7"
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 [package.dependencies]
@@ -1901,7 +1913,7 @@ pluggy = ">=0.12,<2.0"
 tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""}
 
 [package.extras]
-testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"]
+testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"]
 
 [[package]]
 name = "python-dateutil"
@@ -1932,14 +1944,14 @@ files = [
 
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+    {file = "regex-2023.6.3.tar.gz", hash = "sha256:72d1a25bf36d2050ceb35b517afe13864865268dfb45910e2e17a84be6cbfeb0"},
 ]
 
 [[package]]
@@ -2131,18 +2143,18 @@ docutils = ">=0.11,<1.0"
 
 [[package]]
 name = "rich"
-version = "13.4.1"
+version = "13.4.2"
 description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
 category = "main"
 optional = false
 python-versions = ">=3.7.0"
 files = [
-    {file = "rich-13.4.1-py3-none-any.whl", hash = "sha256:d204aadb50b936bf6b1a695385429d192bc1fdaf3e8b907e8e26f4c4e4b5bf75"},
-    {file = "rich-13.4.1.tar.gz", hash = "sha256:76f6b65ea7e5c5d924ba80e322231d7cb5b5981aa60bfc1e694f1bc097fe6fe1"},
+    {file = "rich-13.4.2-py3-none-any.whl", hash = "sha256:8f87bc7ee54675732fa66a05ebfe489e27264caeeff3728c945d25971b6485ec"},
+    {file = "rich-13.4.2.tar.gz", hash = "sha256:d653d6bccede5844304c605d5aac802c7cf9621efd700b46c7ec2b51ea914898"},
 ]
 
 [package.dependencies]
-markdown-it-py = ">=2.2.0,<3.0.0"
+markdown-it-py = ">=2.2.0"
 pygments = ">=2.13.0,<3.0.0"
 typing-extensions = {version = ">=4.0.0,<5.0", markers = "python_version < \"3.9\""}
 
@@ -2151,14 +2163,14 @@ jupyter = ["ipywidgets (>=7.5.1,<9)"]
 
 [[package]]
 name = "ruamel-yaml"
-version = "0.17.31"
+version = "0.17.32"
 description = "ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order"
 category = "dev"
 optional = false
 python-versions = ">=3"
 files = [
-    {file = "ruamel.yaml-0.17.31-py3-none-any.whl", hash = "sha256:3cf153f0047ced526e723097ac615d3009371779432e304dbd5596b6f3a4c777"},
-    {file = "ruamel.yaml-0.17.31.tar.gz", hash = "sha256:098ed1eb6d338a684891a72380277c1e6fc4d4ae0e120de9a447275056dda335"},
+    {file = "ruamel.yaml-0.17.32-py3-none-any.whl", hash = "sha256:23cd2ed620231677564646b0c6a89d138b6822a0d78656df7abda5879ec4f447"},
+    {file = "ruamel.yaml-0.17.32.tar.gz", hash = "sha256:ec939063761914e14542972a5cba6d33c23b0859ab6342f61cf070cfc600efc2"},
 ]
 
 [package.dependencies]
@@ -2323,14 +2335,14 @@ test = ["asv", "gmpy2", "mpmath", "pytest", "pytest-cov", "pytest-xdist", "sciki
 
 [[package]]
 name = "setuptools"
-version = "67.8.0"
+version = "68.0.0"
 description = "Easily download, build, install, upgrade, and uninstall Python packages"
 category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "setuptools-67.8.0-py3-none-any.whl", hash = "sha256:5df61bf30bb10c6f756eb19e7c9f3b473051f48db77fddbe06ff2ca307df9a6f"},
-    {file = "setuptools-67.8.0.tar.gz", hash = "sha256:62642358adc77ffa87233bc4d2354c4b2682d214048f500964dbe760ccedf102"},
+    {file = "setuptools-68.0.0-py3-none-any.whl", hash = "sha256:11e52c67415a381d10d6b462ced9cfb97066179f0e871399e006c4ab101fc85f"},
+    {file = "setuptools-68.0.0.tar.gz", hash = "sha256:baf1fdb41c6da4cd2eae722e135500da913332ab3f2f5c7d33af9b492acb5235"},
 ]
 
 [package.extras]
@@ -2376,14 +2388,14 @@ files = [
 
 [[package]]
 name = "spectrum-fundamentals"
-version = "0.4.0"
+version = "0.4.1"
 description = "Fundamentals public repo"
 category = "main"
 optional = false
 python-versions = ">=3.8.0,<4.0.0"
 files = [
-    {file = "spectrum_fundamentals-0.4.0-py3-none-any.whl", hash = "sha256:c7a7d67a4af049bd8771073073bbcf89db9a705038ccbd43aa46882dc24871e8"},
-    {file = "spectrum_fundamentals-0.4.0.tar.gz", hash = "sha256:501bb8844c7bcc069487dd82f70d70afc9adbe4a964662592f0d90cc90f2adce"},
+    {file = "spectrum_fundamentals-0.4.1-py3-none-any.whl", hash = "sha256:3582f4e0a57598f9c110b1d64808fe35a6acd665dc0ac3512c517362ddf4a2f3"},
+    {file = "spectrum_fundamentals-0.4.1.tar.gz", hash = "sha256:9857135a10b2d69dad78a231d343124c5ffa1adee8d69b319e77ea07f2c852f1"},
 ]
 
 [package.dependencies]
@@ -2486,20 +2498,20 @@ sphinx-rtd-theme = "*"
 
 [[package]]
 name = "sphinx-rtd-theme"
-version = "1.2.1"
+version = "1.2.2"
 description = "Read the Docs theme for Sphinx"
 category = "dev"
 optional = false
 python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7"
 files = [
-    {file = "sphinx_rtd_theme-1.2.1-py2.py3-none-any.whl", hash = "sha256:2cc9351176cbf91944ce44cefd4fab6c3b76ac53aa9e15d6db45a3229ad7f866"},
-    {file = "sphinx_rtd_theme-1.2.1.tar.gz", hash = "sha256:cf9a7dc0352cf179c538891cb28d6fad6391117d4e21c891776ab41dd6c8ff70"},
+    {file = "sphinx_rtd_theme-1.2.2-py2.py3-none-any.whl", hash = "sha256:6a7e7d8af34eb8fc57d52a09c6b6b9c46ff44aea5951bc831eeb9245378f3689"},
+    {file = "sphinx_rtd_theme-1.2.2.tar.gz", hash = "sha256:01c5c5a72e2d025bd23d1f06c59a4831b06e6ce6c01fdd5ebfe9986c0a880fc7"},
 ]
 
 [package.dependencies]
 docutils = "<0.19"
 sphinx = ">=1.6,<7"
-sphinxcontrib-jquery = {version = ">=2.0.0,<3.0.0 || >3.0.0", markers = "python_version > \"3\""}
+sphinxcontrib-jquery = ">=4,<5"
 
 [package.extras]
 dev = ["bump2version", "sphinxcontrib-httpdomain", "transifex-client", "wheel"]
@@ -2681,14 +2693,14 @@ files = [
 
 [[package]]
 name = "tokenize-rt"
-version = "5.0.0"
+version = "5.1.0"
 description = "A wrapper around the stdlib `tokenize` which roundtrips."
 category = "dev"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "tokenize_rt-5.0.0-py2.py3-none-any.whl", hash = "sha256:c67772c662c6b3dc65edf66808577968fb10badfc2042e3027196bed4daf9e5a"},
-    {file = "tokenize_rt-5.0.0.tar.gz", hash = "sha256:3160bc0c3e8491312d0485171dea861fc160a240f5f5766b72a1165408d10740"},
+    {file = "tokenize_rt-5.1.0-py2.py3-none-any.whl", hash = "sha256:9b7bb843e77dd6ed0be5564bfaaba200083911e0497841cd3e9235a6a9794d74"},
+    {file = "tokenize_rt-5.1.0.tar.gz", hash = "sha256:08f0c2daa94c4052e53c2fcaa8e32585e6ae9bdfc800974092d031401694e002"},
 ]
 
 [[package]]
@@ -2829,26 +2841,26 @@ files = [
 
 [[package]]
 name = "typing-extensions"
-version = "4.6.2"
+version = "4.6.3"
 description = "Backported and Experimental Type Hints for Python 3.7+"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "typing_extensions-4.6.2-py3-none-any.whl", hash = "sha256:3a8b36f13dd5fdc5d1b16fe317f5668545de77fa0b8e02006381fd49d731ab98"},
-    {file = "typing_extensions-4.6.2.tar.gz", hash = "sha256:06006244c70ac8ee83fa8282cb188f697b8db25bc8b4df07be1873c43897060c"},
+    {file = "typing_extensions-4.6.3-py3-none-any.whl", hash = "sha256:88a4153d8505aabbb4e13aacb7c486c2b4a33ca3b3f807914a9b4c844c471c26"},
+    {file = "typing_extensions-4.6.3.tar.gz", hash = "sha256:d91d5919357fe7f681a9f2b5b4cb2a5f1ef0a1e9f59c4d8ff0d3491e05c0ffd5"},
 ]
 
 [[package]]
 name = "urllib3"
-version = "2.0.2"
+version = "2.0.3"
 description = "HTTP library with thread-safe connection pooling, file post, and more."
 category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "urllib3-2.0.2-py3-none-any.whl", hash = "sha256:d055c2f9d38dc53c808f6fdc8eab7360b6fdbbde02340ed25cfbcd817c62469e"},
-    {file = "urllib3-2.0.2.tar.gz", hash = "sha256:61717a1095d7e155cdb737ac7bb2f4324a858a1e2e6466f6d03ff630ca68d3cc"},
+    {file = "urllib3-2.0.3-py3-none-any.whl", hash = "sha256:48e7fafa40319d358848e1bc6809b208340fafe2096f1725d05d67443d0483d1"},
+    {file = "urllib3-2.0.3.tar.gz", hash = "sha256:bee28b5e56addb8226c96f7f13ac28cb4c301dd5ea8a6ca179c0b9835e032825"},
 ]
 
 [package.extras]
@@ -2859,24 +2871,24 @@ zstd = ["zstandard (>=0.18.0)"]
 
 [[package]]
 name = "virtualenv"
-version = "20.23.0"
+version = "20.23.1"
 description = "Virtual Python Environment builder"
 category = "dev"
 optional = false
 python-versions = ">=3.7"
 files = [
-    {file = "virtualenv-20.23.0-py3-none-any.whl", hash = "sha256:6abec7670e5802a528357fdc75b26b9f57d5d92f29c5462ba0fbe45feacc685e"},
-    {file = "virtualenv-20.23.0.tar.gz", hash = "sha256:a85caa554ced0c0afbd0d638e7e2d7b5f92d23478d05d17a76daeac8f279f924"},
+    {file = "virtualenv-20.23.1-py3-none-any.whl", hash = "sha256:34da10f14fea9be20e0fd7f04aba9732f84e593dac291b757ce42e3368a39419"},
+    {file = "virtualenv-20.23.1.tar.gz", hash = "sha256:8ff19a38c1021c742148edc4f81cb43d7f8c6816d2ede2ab72af5b84c749ade1"},
 ]
 
 [package.dependencies]
 distlib = ">=0.3.6,<1"
-filelock = ">=3.11,<4"
-platformdirs = ">=3.2,<4"
+filelock = ">=3.12,<4"
+platformdirs = ">=3.5.1,<4"
 
 [package.extras]
-docs = ["furo (>=2023.3.27)", "proselint (>=0.13)", "sphinx (>=6.1.3)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=22.12)"]
-test = ["covdefaults (>=2.3)", "coverage (>=7.2.3)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.3.1)", "pytest-env (>=0.8.1)", "pytest-freezegun (>=0.4.2)", "pytest-mock (>=3.10)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=67.7.1)", "time-machine (>=2.9)"]
+docs = ["furo (>=2023.5.20)", "proselint (>=0.13)", "sphinx (>=7.0.1)", "sphinx-argparse (>=0.4)", "sphinxcontrib-towncrier (>=0.2.1a0)", "towncrier (>=23.6)"]
+test = ["covdefaults (>=2.3)", "coverage (>=7.2.7)", "coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.3.1)", "pytest-env (>=0.8.1)", "pytest-freezer (>=0.4.6)", "pytest-mock (>=3.10)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=67.8)", "time-machine (>=2.9)"]
 
 [[package]]
 name = "xdoctest"
diff --git a/spectrum_io/search_result/msamanda.py b/spectrum_io/search_result/msamanda.py
new file mode 100644
index 0000000..4be13e6
--- /dev/null
+++ b/spectrum_io/search_result/msamanda.py
@@ -0,0 +1,125 @@
+import logging
+from pathlib import Path
+from typing import Union
+
+import pandas as pd
+from spectrum_fundamentals.constants import PARTICLE_MASSES
+
+from .search_results import filter_valid_prosit_sequences
+
+logger = logging.getLogger(__name__)
+
+
+def _update_columns_for_prosit(df: pd.DataFrame):
+    """
+    Update columns of df to work with Prosit.
+
+    :param df: df to modify
+    :return: modified df as pd.DataFrame
+    """
+
+    def _check_unsupported_mods(modstring: str):
+        if modstring:
+            for mod in modstring.split(";"):
+                if not mod.split("(", 1)[1].startswith(("Oxidation", "Carbamidomethyl")):
+                    raise AssertionError(f"Unsupported modification: {mod}")
+
+    def _make_mod_seq(seq: str):
+        seq = seq.replace("m", "M[UNIMOD:35]")
+        seq = seq.replace("c", "C[UNIMOD:4]")
+        return seq
+
+    df["REVERSE"] = df["Protein Accessions"].str.startswith("REV_")
+    df["MASS"] = df["m/z"] * df["PRECURSOR_CHARGE"] - (df["PRECURSOR_CHARGE"] * PARTICLE_MASSES["PROTON"])
+    df["Modifications"].fillna("").apply(_check_unsupported_mods)
+    df["MODIFIED_SEQUENCE"] = df["SEQUENCE"].apply(_make_mod_seq)
+    df["SEQUENCE"] = df["SEQUENCE"].str.upper()
+    df["PEPTIDE_LENGTH"] = df["SEQUENCE"].str.len()
+    df["RAW_FILE"] = df["RAW_FILE"].str.replace(r"\.\w+$", "", regex=True)
+
+    return df[
+        [
+            "SCORE",
+            "MASS",
+            "PRECURSOR_CHARGE",
+            "RAW_FILE",
+            "SCAN_NUMBER",
+            "REVERSE",
+            "MODIFIED_SEQUENCE",
+            "SEQUENCE",
+            "PEPTIDE_LENGTH",
+        ]
+    ]
+
+
+def _remove_decoys_in_targets(full_df):
+    duplicated_psms = full_df[["SCAN_NUMBER", "RAW_FILE", "MODIFIED_SEQUENCE"]].duplicated(keep=False)
+    logger.info(f"Removing {sum(duplicated_psms)} duplicated PSMs...")
+    full_df = full_df[~(full_df["REVERSE"] & duplicated_psms)]
+    if any(full_df[["SCAN_NUMBER", "RAW_FILE", "MODIFIED_SEQUENCE"]].duplicated(keep=False)):
+        raise AssertionError("There are duplicate target PSMs. This is a bug of msamanda!")
+    logger.info(f"{len(full_df)} remaining PSMs")
+
+    return full_df
+
+
+def read_result(path: Union[str, Path], suffix: str = "output.csv") -> pd.DataFrame:
+    """
+    Function to read a msms txt and perform some basic formatting.
+
+    :param path: path to msms.txt to read
+    :param suffix: Optional suffix to determine which fileresult files should be taken from the supplied path
+    :raises FileNotFoundError: If the supplied path is not found
+    :raises AssertionError: If the supplied path does not contain any files matching the provided suffix.
+    :return: pd.DataFrame with the formatted data
+    """
+    if isinstance(path, str):
+        path = Path(path)
+    if path.is_file():
+        pathlist = [path]
+    elif path.is_dir():
+        pathlist = list(path.glob(f"*{suffix}"))
+        if not pathlist:
+            raise AssertionError(f"The directory does not contain any files that match the pattern *{suffix}")
+    else:
+        raise FileNotFoundError(f"{path} does not exist.")
+
+    df_list = []
+    for output_file in pathlist:
+        logger.info(f"Reading {output_file}...")
+        df = pd.read_csv(
+            output_file,
+            sep="\t",
+            skiprows=1,
+            usecols=[
+                "Scan Number",
+                "Sequence",
+                "Modifications",
+                "Filename",
+                "Amanda Score",
+                "m/z",
+                "Charge",
+                "Protein Accessions",
+            ],
+        )
+        df.columns = [
+            "SCAN_NUMBER",
+            "SEQUENCE",
+            "Modifications",
+            "Protein Accessions",
+            "SCORE",
+            "m/z",
+            "PRECURSOR_CHARGE",
+            "RAW_FILE",
+        ]
+        logger.info(f"Finished reading {output_file}")
+
+        df = _update_columns_for_prosit(df)
+        df = filter_valid_prosit_sequences(df)
+        df_list.append(df)
+
+    if len(df_list) == 1:
+        full_df = df_list[0]
+    full_df = pd.concat(df_list, axis=0)
+    full_df = _remove_decoys_in_targets(full_df)
+    return full_df