From d5e5b157e6558c17e6372f4a621b3ccf182336c3 Mon Sep 17 00:00:00 2001
From: Mario Picciani <mario.picciani@tum.de>
Date: Thu, 10 Oct 2024 10:28:57 +0200
Subject: [PATCH] removed dlomix temporarily till stable release

---
 poetry.lock      | 2982 +---------------------------------------------
 pyproject.toml   |   10 +-
 requirements.txt |   19 +-
 3 files changed, 41 insertions(+), 2970 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 7446477..a03a245 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,153 +1,5 @@
 # This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand.
 
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-
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-attrs = ">=17.3.0"
-frozenlist = ">=1.1.1"
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-yarl = ">=1.12.0,<2.0"
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-[package.extras]
-speedups = ["Brotli", "aiodns (>=3.2.0)", "brotlicffi"]
-
-[[package]]
-name = "aiosignal"
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@@ -250,17 +102,6 @@ doc = ["Sphinx (>=7.4,<8.0)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)",
 test = ["anyio[trio]", "coverage[toml] (>=7)", "exceptiongroup (>=1.2.0)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.21.0b1)"]
 trio = ["trio (>=0.26.1)"]
 
-[[package]]
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-description = "Disable App Nap on macOS >= 10.9"
-optional = true
-python-versions = ">=3.6"
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 version = "1.7.1"
@@ -280,50 +121,6 @@ numpy = ["numpy"]
 pytorch = ["pytorch"]
 sparse = ["sparse (>=0.15.1)"]
 
-[[package]]
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-description = "Annotate AST trees with source code positions"
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-
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@@ -395,27 +192,6 @@ test = ["beautifulsoup4 (>=4.8.0)", "coverage (>=4.5.4)", "fixtures (>=3.0.0)",
 toml = ["tomli (>=1.1.0)"]
 yaml = ["PyYAML"]
 
-[[package]]
-name = "beautifulsoup4"
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-description = "Screen-scraping library"
-optional = true
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-[package.dependencies]
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-chardet = ["chardet"]
-charset-normalizer = ["charset-normalizer"]
-html5lib = ["html5lib"]
-lxml = ["lxml"]
-
 [[package]]
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@@ -462,24 +238,6 @@ d = ["aiohttp (>=3.10)"]
 jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"]
 uvloop = ["uvloop (>=0.15.2)"]
 
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-
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-
 [[package]]
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@@ -537,17 +295,6 @@ numpy = "*"
 [package.extras]
 doc = ["gitpython", "numpydoc", "sphinx"]
 
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@@ -777,17 +524,6 @@ files = [
 [package.dependencies]
 colorama = {version = "*", markers = "platform_system == \"Windows\""}
 
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@@ -799,23 +535,6 @@ files = [
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@@ -1127,230 +846,17 @@ files = [
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-
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-optional = true
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-
 [[package]]
 name = "docutils"
 version = "0.21.2"
@@ -1408,49 +914,21 @@ files = [
 [package.extras]
 test = ["pytest (>=6)"]
 
-[[package]]
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-
-[[package]]
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-
 [[package]]
 name = "filelock"
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+version = "3.12.4"
 description = "A platform independent file lock."
 optional = false
 python-versions = ">=3.8"
 files = [
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 [package.extras]
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 [[package]]
 name = "flake8"
@@ -1535,17 +1013,6 @@ restructuredtext-lint = "*"
 [package.extras]
 develop = ["build", "twine"]
 
-[[package]]
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 [[package]]
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@@ -1617,243 +1084,6 @@ ufo = ["fs (>=2.2.0,<3)"]
 unicode = ["unicodedata2 (>=15.1.0)"]
 woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"]
 
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-files = [
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@@ -1970,40 +1200,6 @@ files = [
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 numpy = ">=1.19.3"
 
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-
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@@ -2099,95 +1295,6 @@ files = [
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@@ -2230,106 +1337,6 @@ files = [
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@@ -2469,25 +1476,6 @@ pandas = "*"
 tqdm = "*"
 tritonclient = {version = ">=2.23,<2.41 || >2.41", extras = ["grpc"], markers = "python_version >= \"3.8\" and python_version < \"3.11\""}
 
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-description = "Clang Python Bindings, mirrored from the official LLVM repo: https://github.com/llvm/llvm-project/tree/main/clang/bindings/python, to make the installation process easier."
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 [[package]]
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 version = "0.42.0"
@@ -2672,24 +1660,6 @@ html5 = ["html5lib"]
 htmlsoup = ["BeautifulSoup4"]
 source = ["Cython (>=3.0.11)"]
 
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-version = "3.7"
-description = "Python implementation of John Gruber's Markdown."
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-
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 [package.extras]
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@@ -6379,21 +3888,6 @@ notebook = ["ipywidgets (>=6)"]
 slack = ["slack-sdk"]
 telegram = ["requests"]
 
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-
 [[package]]
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@@ -6538,13 +4032,13 @@ zstd = ["zstandard (>=0.18.0)"]
 
 [[package]]
 name = "uvicorn"
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 [package.dependencies]
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-    {file = "yarl-1.14.0-py3-none-any.whl", hash = "sha256:c8ed4034f0765f8861620c1f2f2364d2e58520ea288497084dae880424fc0d9f"},
-    {file = "yarl-1.14.0.tar.gz", hash = "sha256:88c7d9d58aab0724b979ab5617330acb1c7030b79379c8138c1c8c94e121d1b3"},
-]
-
-[package.dependencies]
-idna = ">=2.0"
-multidict = ">=4.0"
-propcache = ">=0.2.0"
-
 [[package]]
 name = "zipp"
 version = "3.20.2"
@@ -7236,10 +4309,7 @@ enabler = ["pytest-enabler (>=2.2)"]
 test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-ignore-flaky"]
 type = ["pytest-mypy"]
 
-[extras]
-dlomix = ["dlomix", "tensorflow"]
-
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9.0,<3.11.0"
-content-hash = "6bae8e4cdeeed3f3fc9221ecf99f66c3ee13d9b2fbd3427c1d88a3b3538c1004"
+content-hash = "06a97f68fadc925e77afbc0800630b39bea3e89e76798270b91dbf9fd735b151"
diff --git a/pyproject.toml b/pyproject.toml
index 0b89735..046bf84 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -33,9 +33,9 @@ spectrum_fundamentals = ">=0.7.4,<0.8.0"
 spectrum-io = ">=0.6.3,<0.7.0"
 picked_group_fdr = ">=0.7.1"
 
-dlomix = {extras = ["rltl-report", "wandb"], url="https://github.com/wilhelm-lab/dlomix/tarball/feature/bmpc", optional = true}
-tensorflow = {version = ">=2.13,<2.16", extras = ["and-cuda"], optional = true}
-wandb = {version = "^0.17.5", optional = true}
+#dlomix = {extras = ["rltl-report", "wandb"], url="https://github.com/wilhelm-lab/dlomix/tarball/feature/bmpc", optional = true}
+#tensorflow = {version = ">=2.13,<2.16", extras = ["and-cuda"], optional = true}
+#wandb = {version = "^0.17.5", optional = true}
 koinapy = "^0.0.7"
 
 [tool.poetry.dev-dependencies]
@@ -73,8 +73,8 @@ oktoberfest = "oktoberfest.__main__:main"
 [tool.poetry.group.dev.dependencies]
 sphinx-autodoc-typehints = ">=1.24,<3.0"
 
-[tool.poetry.extras]
-dlomix = ["dlomix", "tensorflow"]
+#[tool.poetry.extras]
+#dlomix = ["dlomix", "tensorflow"]
 
 [tool.black]
 line-length = 120
diff --git a/requirements.txt b/requirements.txt
index f78821a..3a4fcee 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -8,7 +8,7 @@ attrs==24.2.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0
 authlib==1.3.2 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 babel==2.16.0 ; python_version >= "3.9" and python_full_version < "3.11.0"
 bandit==1.7.10 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
-black==24.10.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
+black==24.10.0 ; python_version >= "3.9" and python_full_version < "3.11.0"
 bottleneck==1.4.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 certifi==2024.8.30 ; python_version >= "3.9" and python_full_version < "3.11.0"
 cffi==1.17.1 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0" and platform_python_implementation != "PyPy"
@@ -17,17 +17,17 @@ charset-normalizer==3.4.0 ; python_version >= "3.9" and python_full_version < "3
 click==8.1.7 ; python_version >= "3.9" and python_full_version < "3.11.0"
 colorama==0.4.6 ; python_version >= "3.9" and python_full_version < "3.11.0"
 contourpy==1.3.0 ; python_version >= "3.9" and python_full_version < "3.11.0"
-coverage[toml]==7.6.2 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
+coverage[toml]==7.6.2 ; python_version >= "3.9" and python_full_version < "3.11.0"
 cryptography==43.0.1 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 cycler==0.12.1 ; python_version >= "3.9" and python_full_version < "3.11.0"
 cython==3.0.11 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 darglint==1.8.1 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
-distlib==0.3.8 ; python_version >= "3.9" and python_full_version < "3.11.0"
+distlib==0.3.9 ; python_version >= "3.9" and python_full_version < "3.11.0"
 docutils==0.21.2 ; python_version >= "3.9" and python_full_version < "3.11.0"
 dparse==0.6.4b0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 et-xmlfile==1.1.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 exceptiongroup==1.2.2 ; python_version >= "3.9" and python_version < "3.11"
-filelock==3.16.1 ; python_version >= "3.9" and python_full_version < "3.11.0"
+filelock==3.12.4 ; python_version >= "3.9" and python_full_version < "3.11.0"
 flake8-bandit==4.1.1 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 flake8-bugbear==24.8.19 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 flake8-docstrings==1.7.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
@@ -58,7 +58,7 @@ mccabe==0.7.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0
 mdurl==0.1.2 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 moepy==1.1.4 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 mokapot==0.10.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
-mypy-extensions==1.0.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
+mypy-extensions==1.0.0 ; python_version >= "3.9" and python_full_version < "3.11.0"
 mypy==1.11.2 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 natsort==8.4.0 ; python_version >= "3.9" and python_full_version < "3.11.0"
 networkx==2.8.8 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
@@ -68,7 +68,7 @@ numpy==1.24.4 ; python_version >= "3.9" and python_version < "3.11"
 openpyxl==3.1.5 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 packaging==24.1 ; python_version >= "3.9" and python_version < "3.11"
 pandas==2.2.3 ; python_version >= "3.9" and python_full_version < "3.11.0"
-pathspec==0.12.1 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
+pathspec==0.12.1 ; python_version >= "3.9" and python_full_version < "3.11.0"
 pbr==6.1.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 pep8-naming==0.14.1 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 picked-group-fdr==0.7.1 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
@@ -104,7 +104,7 @@ rich==13.9.2 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 ruamel-yaml-clib==0.2.8 ; platform_python_implementation == "CPython" and python_full_version < "3.11.0" and python_full_version >= "3.9.0"
 ruamel-yaml==0.18.6 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 safety-schemas==0.0.5 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
-safety==3.2.3 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
+safety==3.2.8 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 scikit-learn==1.5.2 ; python_version >= "3.9" and python_full_version < "3.11.0"
 scipy==1.13.1 ; python_version >= "3.9" and python_full_version < "3.11.0"
 seaborn==0.13.2 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
@@ -116,6 +116,7 @@ snowballstemmer==2.2.0 ; python_version >= "3.9" and python_full_version < "3.11
 sortedcontainers==2.4.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 spectrum-fundamentals==0.7.4 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 spectrum-io==0.6.3 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
+sphinx-autobuild==2024.10.3 ; python_version >= "3.9" and python_full_version < "3.11.0"
 sphinx-autodoc-typehints==2.3.0 ; python_version >= "3.9" and python_full_version < "3.11.0"
 sphinx-click==6.0.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 sphinx-rtd-theme==3.0.1 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
@@ -143,9 +144,9 @@ types-requests==2.32.0.20240914 ; python_full_version >= "3.9.0" and python_full
 typing-extensions==4.12.2 ; python_version >= "3.9" and python_version < "3.11"
 tzdata==2024.2 ; python_version >= "3.9" and python_full_version < "3.11.0"
 urllib3==2.2.3 ; python_version >= "3.9" and python_version < "3.11"
-uvicorn==0.31.0 ; python_version >= "3.9" and python_full_version < "3.11.0"
+uvicorn==0.31.1 ; python_version >= "3.9" and python_full_version < "3.11.0"
 virtualenv==20.26.6 ; python_version >= "3.9" and python_full_version < "3.11.0"
 watchfiles==0.24.0 ; python_version >= "3.9" and python_full_version < "3.11.0"
 websockets==13.1 ; python_version >= "3.9" and python_full_version < "3.11.0"
-xdoctest[colors]==1.2.0 ; python_full_version >= "3.9.0" and python_full_version < "3sph.11.0"
+xdoctest[colors]==1.2.0 ; python_full_version >= "3.9.0" and python_full_version < "3.11.0"
 zipp==3.20.2 ; python_version >= "3.9" and python_full_version < "3.11.0"