From 9438ff10a3dd8aecbc6f4c31ccf2e42d1daecf34 Mon Sep 17 00:00:00 2001 From: Mario Picciani Date: Sat, 11 Nov 2023 13:57:52 +0100 Subject: [PATCH] added dev dependencies --- requirements.txt | 86 +++++++++++++++++++++++++++++++++++++++++++++--- 1 file changed, 81 insertions(+), 5 deletions(-) diff --git a/requirements.txt b/requirements.txt index 7942ab53..97fb7e75 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,55 +1,131 @@ +alabaster==0.7.13 ; python_version >= "3.8" and python_full_version < "3.11.0" +attrs==23.1.0 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +babel==2.13.1 ; python_version >= "3.8" and python_full_version < "3.11.0" +bandit==1.7.5 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +black==23.11.0 ; python_version >= "3.8" and python_full_version < "3.11.0" blosc2==2.0.0 ; python_version >= "3.8" and python_full_version < "3.11.0" -click==8.1.7 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" -colorama==0.4.6 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" and platform_system == "Windows" +certifi==2023.7.22 ; python_version >= "3.8" and python_full_version < "3.11.0" +cfgv==3.4.0 ; python_version >= "3.8" and python_full_version < "3.11.0" +charset-normalizer==3.3.2 ; python_version >= "3.8" and python_full_version < "3.11.0" +click==8.1.7 ; python_version >= "3.8" and python_full_version < "3.11.0" +colorama==0.4.6 ; python_version >= "3.8" and python_full_version < "3.11.0" contourpy==1.1.1 ; python_version >= "3.8" and python_full_version < "3.11.0" +coverage[toml]==7.3.2 ; python_version >= "3.8" and python_full_version < "3.11.0" cycler==0.12.1 ; python_version >= "3.8" and python_full_version < "3.11.0" cython==3.0.5 ; python_version >= "3.8" and python_full_version < "3.11.0" +darglint==1.8.1 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +distlib==0.3.7 ; python_version >= "3.8" and python_full_version < "3.11.0" +docutils==0.20.1 ; python_version >= "3.8" and python_full_version < "3.11.0" +dparse==0.6.3 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +et-xmlfile==1.1.0 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +exceptiongroup==1.1.3 ; python_full_version >= "3.8.0" and python_version < "3.11" +filelock==3.13.1 ; python_version >= "3.8" and python_full_version < "3.11.0" +flake8-bandit==4.1.1 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +flake8-bugbear==23.3.12 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +flake8-docstrings==1.7.0 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +flake8-rst-docstrings==0.3.0 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +flake8==5.0.4 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" fonttools==4.44.0 ; python_version >= "3.8" and python_full_version < "3.11.0" +gitdb==4.0.11 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +gitpython==3.1.40 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" grpcio==1.59.2 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" h5py==3.10.0 ; python_version >= "3.8" and python_full_version < "3.11.0" +identify==2.5.31 ; python_version >= "3.8" and python_full_version < "3.11.0" +idna==3.4 ; python_version >= "3.8" and python_full_version < "3.11.0" +imagesize==1.4.1 ; python_version >= "3.8" and python_full_version < "3.11.0" importlib-metadata==6.8.0 ; python_version >= "3.8" and python_full_version < "3.11.0" importlib-resources==6.1.1 ; python_version >= "3.8" and python_version < "3.10" +iniconfig==2.0.0 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +jinja2==3.1.2 ; python_version >= "3.8" and python_full_version < "3.11.0" joblib==1.3.2 ; python_version >= "3.8" and python_full_version < "3.11.0" kiwisolver==1.4.5 ; python_version >= "3.8" and python_full_version < "3.11.0" +livereload==2.6.3 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" llvmlite==0.41.1 ; python_version >= "3.8" and python_full_version < "3.11.0" lxml==4.9.3 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" markdown-it-py==3.0.0 ; python_version >= "3.8" and python_full_version < "3.11.0" +markupsafe==2.1.3 ; python_version >= "3.8" and python_full_version < "3.11.0" matplotlib==3.7.3 ; python_version >= "3.8" and python_full_version < "3.11.0" +mccabe==0.7.0 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" mdurl==0.1.2 ; python_version >= "3.8" and python_full_version < "3.11.0" moepy==1.1.4 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" mokapot==0.9.1 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" msgpack==1.0.7 ; python_version >= "3.8" and python_full_version < "3.11.0" +mypy-extensions==1.0.0 ; python_version >= "3.8" and python_full_version < "3.11.0" +mypy==1.7.0 ; python_version >= "3.8" and python_full_version < "3.11.0" +nodeenv==1.8.0 ; python_version >= "3.8" and python_full_version < "3.11.0" numba==0.58.1 ; python_version >= "3.8" and python_full_version < "3.11.0" numexpr==2.8.6 ; python_version >= "3.8" and python_full_version < "3.11.0" numpy==1.24.4 ; python_version >= "3.8" and python_full_version < "3.11.0" +openpyxl==3.1.2 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" packaging==23.2 ; python_version >= "3.8" and python_full_version < "3.11.0" pandas==1.5.3 ; python_version >= "3.8" and python_full_version < "3.11.0" +pathspec==0.11.2 ; python_version >= "3.8" and python_full_version < "3.11.0" +pbr==6.0.0 ; python_version >= "3.8" and python_full_version < "3.11.0" +pep8-naming==0.13.3 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" pillow==10.1.0 ; python_version >= "3.8" and python_full_version < "3.11.0" +platformdirs==3.11.0 ; python_version >= "3.8" and python_full_version < "3.11.0" +pluggy==1.3.0 ; python_version >= "3.8" and python_full_version < "3.11.0" +pre-commit-hooks==4.5.0 ; python_version >= "3.8" and python_full_version < "3.11.0" +pre-commit==3.5.0 ; python_version >= "3.8" and python_full_version < "3.11.0" protobuf==3.20.3 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" py-cpuinfo==9.0.0 ; python_version >= "3.8" and python_full_version < "3.11.0" -pygments==2.16.1 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +pycodestyle==2.9.1 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +pydocstyle==6.3.0 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +pyflakes==2.5.0 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +pygments==2.16.1 ; python_version >= "3.8" and python_full_version < "3.11.0" pymzml==2.5.2 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" pyparsing==3.1.1 ; python_version >= "3.8" and python_full_version < "3.11.0" pyteomics==4.6.3 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +pytest==7.4.3 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" python-dateutil==2.8.2 ; python_version >= "3.8" and python_full_version < "3.11.0" python-rapidjson==1.13 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" pytz==2023.3.post1 ; python_version >= "3.8" and python_full_version < "3.11.0" -pyyaml==6.0.1 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +pyupgrade==3.8.0 ; python_version >= "3.8" and python_full_version < "3.11.0" +pyyaml==6.0.1 ; python_version >= "3.8" and python_full_version < "3.11.0" regex==2023.10.3 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +requests==2.31.0 ; python_version >= "3.8" and python_full_version < "3.11.0" +restructuredtext-lint==1.4.0 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" rich==13.6.0 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +ruamel-yaml-clib==0.2.8 ; platform_python_implementation == "CPython" and python_full_version < "3.11.0" and python_version >= "3.8" +ruamel-yaml==0.18.5 ; python_version >= "3.8" and python_full_version < "3.11.0" +safety==2.3.4 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" scikit-learn==1.3.2 ; python_version >= "3.8" and python_full_version < "3.11.0" scipy==1.10.1 ; python_version >= "3.8" and python_full_version < "3.11.0" seaborn==0.12.2 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" setuptools-scm==8.0.4 ; python_version >= "3.8" and python_full_version < "3.11.0" setuptools==68.2.2 ; python_version >= "3.8" and python_full_version < "3.11.0" six==1.16.0 ; python_version >= "3.8" and python_full_version < "3.11.0" +smmap==5.0.1 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +snowballstemmer==2.2.0 ; python_version >= "3.8" and python_full_version < "3.11.0" spectrum-fundamentals==0.4.4 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" spectrum-io==0.3.4 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +sphinx-autobuild==2021.3.14 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +sphinx-autodoc-typehints==1.25.0 ; python_version >= "3.8" and python_full_version < "3.11.0" +sphinx-click==5.0.1 ; python_version >= "3.8" and python_full_version < "3.11.0" +sphinx-rtd-dark-mode==1.3.0 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +sphinx-rtd-theme==0.5.1 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +sphinx==7.1.2 ; python_version >= "3.8" and python_full_version < "3.11.0" +sphinxcontrib-applehelp==1.0.4 ; python_version >= "3.8" and python_full_version < "3.11.0" +sphinxcontrib-devhelp==1.0.2 ; python_version >= "3.8" and python_full_version < "3.11.0" +sphinxcontrib-htmlhelp==2.0.1 ; python_version >= "3.8" and python_full_version < "3.11.0" +sphinxcontrib-jsmath==1.0.1 ; python_version >= "3.8" and python_full_version < "3.11.0" +sphinxcontrib-qthelp==1.0.3 ; python_version >= "3.8" and python_full_version < "3.11.0" +sphinxcontrib-serializinghtml==1.1.5 ; python_version >= "3.8" and python_full_version < "3.11.0" +stevedore==5.1.0 ; python_version >= "3.8" and python_full_version < "3.11.0" tables==3.8.0 ; python_version >= "3.8" and python_full_version < "3.11.0" threadpoolctl==3.2.0 ; python_version >= "3.8" and python_full_version < "3.11.0" +tokenize-rt==5.2.0 ; python_version >= "3.8" and python_full_version < "3.11.0" tomli==2.0.1 ; python_version >= "3.8" and python_version < "3.11" +tornado==6.3.3 ; python_version >= "3.8" and python_full_version < "3.11.0" tqdm==4.66.1 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" triqler==0.6.4 ; python_version >= "3.8" and python_full_version < "3.11.0" tritonclient[grpc]==2.36.0 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" -typing-extensions==4.8.0 ; python_version >= "3.8" and python_full_version < "3.11.0" +typeguard==4.1.5 ; python_version >= "3.8" and python_full_version < "3.11.0" +types-attrs==19.1.0 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +types-pkg-resources==0.1.3 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +types-requests==2.31.0.10 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" +typing-extensions==4.8.0 ; python_version >= "3.8" and python_version < "3.11" +urllib3==2.0.7 ; python_version >= "3.8" and python_full_version < "3.11.0" +virtualenv==20.24.6 ; python_version >= "3.8" and python_full_version < "3.11.0" +xdoctest[colors]==1.1.2 ; python_full_version >= "3.8.0" and python_full_version < "3.11.0" zipp==3.17.0 ; python_version >= "3.8" and python_full_version < "3.11.0"