README.Rmd

---
output:
  md_document:
    variant: gfm
html_preview: false
---


```{r echo=FALSE, results="hide", message=FALSE}
library("badger")
library("ypages")
```


#  clusterProfiler

<img src="https://raw.githubusercontent.com/Bioconductor/BiocStickers/master/clusterProfiler/clusterProfiler.png" height="200" align="right" />

[![Project Status: Active - The project has reached a stable, usable state and is being actively developed.](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)
`r badge_bioc_release("clusterProfiler", "green")`
`r badge_devel("guangchuangyu/clusterProfiler", "green")`
[![Bioc](http://www.bioconductor.org/shields/years-in-bioc/clusterProfiler.svg)](https://www.bioconductor.org/packages/devel/bioc/html/clusterProfiler.html#since)



[![platform](http://www.bioconductor.org/shields/availability/devel/clusterProfiler.svg)](https://www.bioconductor.org/packages/devel/bioc/html/clusterProfiler.html#archives)
[![Build Status](http://www.bioconductor.org/shields/build/devel/bioc/clusterProfiler.svg)](https://bioconductor.org/checkResults/devel/bioc-LATEST/clusterProfiler/)
[![Linux/Mac Travis Build Status](https://img.shields.io/travis/GuangchuangYu/clusterProfiler/master.svg?label=Mac%20OSX%20%26%20Linux)](https://travis-ci.org/GuangchuangYu/clusterProfiler)
[![AppVeyor Build Status](https://img.shields.io/appveyor/ci/Guangchuangyu/clusterProfiler/master.svg?label=Windows)](https://ci.appveyor.com/project/GuangchuangYu/clusterProfiler)
[![codecov](https://codecov.io/gh/GuangchuangYu/clusterProfiler/branch/master/graph/badge.svg)](https://codecov.io/gh/GuangchuangYu/clusterProfiler/)

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This package implements methods to analyze and visualize functional profiles of genomic coordinates (supported by [ChIPseeker](http://www.bioconductor.org/packages/ChIPseeker)), gene and gene clusters.


For details, please visit <https://yulab-smu.top/biomedical-knowledge-mining-book/>.


## :writing_hand: Authors

Guangchuang YU

School of Basic Medical Sciences, Southern Medical University

<https://guangchuangyu.github.io>


[![Twitter](https://img.shields.io/twitter/url/http/shields.io.svg?style=social&logo=twitter)](https://twitter.com/intent/tweet?hashtags=clusterProfiler&url=http://online.liebertpub.com/doi/abs/10.1089/omi.2011.0118&screen_name=guangchuangyu)
[![saythanks](https://img.shields.io/badge/say-thanks-ff69b4.svg)](https://saythanks.io/to/GuangchuangYu)
`r badger::badge_custom('follow me on', 'WeChat', 'green', 'https://guangchuangyu.github.io/blog_images/biobabble.jpg')`


------------------------------------------------------------------------

Please cite the following article when using `clusterProfiler`:

__*Yu G*__, Wang L, Han Y and He Q^\*^. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS: A Journal of Integrative Biology. 2012, 16(5):284-287.


`r badge_custom("1st most cited paper", "in OMICS", "green",
  "http://online.liebertpub.com/action/showMostCitedArticles?journalCode=omi")`
`r badge_custom("ESI", "Highly Cited Paper", "green")`
`r badge_doi("10.1089/omi.2011.0118", "green")`


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### Citation




<img src="https://guangchuangyu.github.io/software/citation_trend/clusterProfiler.png" width="890"/>


### Download stats

r badge_download_bioc("clusterProfiler")
r badge_bioc_download("clusterProfiler", "total", "blue")
r badge_bioc_download("clusterProfiler", "month", "blue")


<img src="https://guangchuangyu.github.io/software/dlstats/clusterProfiler.png" width="890"/>

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