Dockerfile

## Initialize all build arguments in docker build
ARG mode

## Reproduces all results in original research paper using provided R code:
FROM rocker/tidyverse:4.0.1 AS reproduction
RUN echo "this is the stage that sets VAR=reproduction"
ENV VAR="reproduction"

## Generates all data visualizations confirming successful replication:
FROM python:3.7 AS validation
RUN echo "this is the stage that sets VAR=validation"
ENV VAR="validation"

FROM python:3.7 AS replication
RUN echo "this is the stage that sets VAR=replication"
ENV VAR="replication"

## Chooses docker build with respect to parameter `mode`
FROM ${mode} AS final
RUN echo "VAR is equal to ${VAR}"

ARG DEBIAN_FRONTEND=noninteractive

## Copies all files in GitHub project and defaults working directory to /app
ADD . / app/
WORKDIR /app

## Removes all irrelevant src files with respect to provided mode parameter

RUN find ./mode -mindepth 1 ! -regex '^./mode/'$VAR'\(/.*\)?' -delete;
## Removes all irrelevant data files with respect to provided mode parameter
#RUN find ./data -mindepth 1 ! -regex '^./data/'$VAR'\(/.*\)?' -delete

RUN mkdir -p data/post_processed data/precision_recall data/roc data/calibration;
RUN mkdir -p $VAR/post_processed $VAR/precision_recall $VAR/roc $VAR/calibration;
RUN bash ./mode/$VAR/setup.sh;

RUN pip install -r requirements.txt
RUN pip install -e .