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how to reproduce results liver segmentation using python #377

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caki35 opened this issue Oct 19, 2024 · 0 comments
Open

how to reproduce results liver segmentation using python #377

caki35 opened this issue Oct 19, 2024 · 0 comments

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@caki35
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caki35 commented Oct 19, 2024

I'd like to reproduce results on my own liver CT images using python. My images are similar to those in your paper like that:
Screenshot from 2024-10-19 17-38-43
However, your documentation about how to use python API is not sufficient. What parameters should I provide to the totalsegmentator(input_img). I examined the following function but there are too much parameters. Can you explain the related ones for my task.

def totalsegmentator(input: Union[str, Path, Nifti1Image], output: Union[str, Path, None]=None, ml=False, nr_thr_resamp=1, nr_thr_saving=6,
fast=False, nora_tag="None", preview=False, task="total", roi_subset=None,
statistics=False, radiomics=False, crop_path=None, body_seg=False,
force_split=False, output_type="nifti", quiet=False, verbose=False, test=0,
skip_saving=False, device="gpu", license_number=None,
statistics_exclude_masks_at_border=True, no_derived_masks=False,
v1_order=False, fastest=False, roi_subset_robust=None, stats_aggregation="mean",
remove_small_blobs=False):

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