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Hello, I have some issue while using the totalsegmentator. Figured out that some of the dicom file might be corrupted. Tested using the pydicom.dcmread to read the "corrupted" file, if the force=True was set, pydicom can read the file without issue, also tested import using imageJ with no problem. But if I didn't set force=True, it gave me error (invalid dicom file). Is there a way to help the totalsegmentator to get around this issue? Thanks!
The text was updated successfully, but these errors were encountered:
@mingtian126 I think TotalSegmentator is natively built to only work with nifti files (nii.gz not dcm).
I would also need to use TS on dicom files, so if someone can give an insight on how to do it properly would be great !
Hello, I have some issue while using the totalsegmentator. Figured out that some of the dicom file might be corrupted. Tested using the pydicom.dcmread to read the "corrupted" file, if the force=True was set, pydicom can read the file without issue, also tested import using imageJ with no problem. But if I didn't set force=True, it gave me error (invalid dicom file). Is there a way to help the totalsegmentator to get around this issue? Thanks!
The text was updated successfully, but these errors were encountered: