diff --git a/README.md b/README.md
index adaeb1da..76677e6c 100644
--- a/README.md
+++ b/README.md
@@ -44,7 +44,7 @@ If PDF downloading of session code is not working for you, please follow the fol
- Step 3: To set this path variable run: `Sys.setenv(PATH=paste(Sys.getenv("PATH"),"C:/Program Files/MiKTeX 2.9/miktex/bin/x64/",sep=";"))`.
#### Windows Users: Only for Github installation
-If you are using Windows, please download and install RTools before installing the `devtools` package. After you install RTools, please make sure you add "C:\Rtools\bin" to your PATH variable (instructions here). Additionally, when using `devtools` on Windows machines, there is a known bug that sometimes results in the inability to download all package dependencies. If this happens to you, please install the packages and their dependencies directly from CRAN.
+If you are using Windows, please download and install RTools before installing the `devtools` package. After you install RTools, please make sure you add "C:\Rtools\bin" to your PATH variable (instructions here). Additionally, when using `devtools` on Windows machines, there is a known bug that sometimes results in the inability to download all package dependencies. If this happens to you, please install the packages and their dependencies directly from CRAN.
#### Any other problems with install_github()
Although the recommended way to install is through CRAN, if you are trying to install the Github version and are having problems, follow these steps.
diff --git a/inst/CITATION b/inst/CITATION
index 52c3abc0..ecc7f315 100644
--- a/inst/CITATION
+++ b/inst/CITATION
@@ -1,32 +1,32 @@
citHeader("To cite wallace in publications use:")
-citEntry(
- entry = "Article",
+bibentry(
+ bibtype = "Article",
title = "wallace 2: a shiny app for modeling species niches and distributions redesigned to facilitate expansion via module contributions",
- author = personList(
- as.person("J. M. Kass"),
- as.person("G. E. Pinilla-Buitrago"),
- as.person("A. Paz"),
- as.person("B. A. Johnson"),
- as.person("V. Grisales-Betancur"),
- as.person("S. I. Meenan"),
- as.person("D. Attali"),
- as.person("O. Broennimann"),
- as.person("P. J. Galante"),
- as.person("B. S. Maitner"),
- as.person("H. L. Owens"),
- as.person("S. Varela"),
- as.person("M. E. Aiello-Lammens"),
- as.person("C. Merow"),
- as.person("M. E. Blair"),
- as.person("R. P. Anderson")
+ author = c(
+ person("J. M. Kass"),
+ person("G. E. Pinilla-Buitrago"),
+ person("A. Paz"),
+ person("B. A. Johnson"),
+ person("V. Grisales-Betancur"),
+ person("S. I. Meenan"),
+ person("D. Attali"),
+ person("O. Broennimann"),
+ person("P. J. Galante"),
+ person("B. S. Maitner"),
+ person("H. L. Owens"),
+ person("S. Varela"),
+ person("M. E. Aiello-Lammens"),
+ person("C. Merow"),
+ person("M. E. Blair"),
+ person("R. P. Anderson")
),
journal = "Ecography",
- year = "2022",
- volume = "",
+ year = "2023",
+ volume = "2023(3)",
number = "e06547",
- pages = "",
- url = "",
+ pages = "1-9",
+ url = "https://onlinelibrary.wiley.com/doi/full/10.1111/ecog.06547",
textVersion =
- paste("Kass, J.M., Pinilla-Buitrago, G.E., Paz, A., Johnson, B.A., Grisales-Betancur, V., Meenan, S.I., Attali, D., Broennimann, O., Galante, P.J., Maitner, B.S., Owens, H., Varela, S., Aiello-Lammens, Merow, C., M.E., Blair, M.E. & Anderson, R.P. (2022). wallace 2: a shiny app for modeling species niches and distributions redesigned to facilitate expansion via module contributions. Ecography, e06547. ")
+ paste("Kass, J.M., Pinilla-Buitrago, G.E., Paz, A., Johnson, B.A., Grisales-Betancur, V., Meenan, S.I., Attali, D., Broennimann, O., Galante, P.J., Maitner, B.S., Owens, H., Varela, S., Aiello-Lammens, Merow, C., M.E., Blair, M.E. & Anderson, R.P. (2023). wallace 2: a shiny app for modeling species niches and distributions redesigned to facilitate expansion via module contributions. Ecography, e06547. ")
)
diff --git a/vignettes/tutorial-v2-esp.Rmd b/vignettes/tutorial-v2-esp.Rmd
index b957fb2f..7ec312d5 100644
--- a/vignettes/tutorial-v2-esp.Rmd
+++ b/vignettes/tutorial-v2-esp.Rmd
@@ -3,7 +3,7 @@ title: "Tutorial de Wallace Aplicación de modelado Ecológico v2.0"
author:
- Bethany A. Johnson, Gonzalo E. Pinilla-Buitrago, Andrea Paz, Jamie M. Kass, Sarah I. Meenan, Robert P. Anderson
- Traducción al español por Andrea Paz y Bethany Johnson
-date: "11 March 2023"
+date: "2023-03-11"
output: rmarkdown::html_vignette
vignette: >
%\VignetteIndexEntry{Tutorial de Wallace Aplicación de modelado Ecológico v2.0}
diff --git a/vignettes/tutorial-v2.Rmd b/vignettes/tutorial-v2.Rmd
index 573ef417..17f07c79 100644
--- a/vignettes/tutorial-v2.Rmd
+++ b/vignettes/tutorial-v2.Rmd
@@ -1,7 +1,7 @@
---
title: "Wallace Ecological Modeling Application v2.0 Vignette"
author: Bethany A. Johnson, Gonzalo E. Pinilla-Buitrago, Andrea Paz, Jamie M. Kass, Sarah I. Meenan, Robert P. Anderson
-date: "4/18/2022; updated 03/11/2023"
+date: "2022-04-18; updated 2023-03-11"
output: rmarkdown::html_vignette
vignette: >
%\VignetteIndexEntry{Wallace Ecological Modeling Application v2.0 Vignette}
@@ -101,7 +101,7 @@ knitr::include_graphics("vignette_img/orientation_2.png")
(**1**) These are the components. You will be stepping sequentially through them. *Wallace v2* now includes a Support button (**1a**), which links to the Google Group, email, website, and the Github page to report issues, as well as the quit button (**1b**), which will end the session.\
(**2**) This is the toolbar with all the user interface controls, such as buttons, text inputs, etc. You can see that the module *Query Database (Present)* is currently selected. You'll see that two other modules exist for this component: *Query Database (Paleo)* and *User-specified*. This last module lets you upload your own occurrence data. Try choosing it instead and notice that the toolbar changes, then click back to *Query Database (Present)*.\
-Both the **Component** and *Module* have queestion mark buttons (?) next to the title text. Clicking these will link to the respective guidance texts.\
+Both the **Component** and *Module* have question mark buttons (?) next to the title text. Clicking these will link to the respective guidance texts.\
Within this toolbar, you can find the module name and the `R` packages it uses (**2a**), as well as the control panel for the selected module (**2b**). Modules can be contributed by other researchers and the developers; CRAN links and documentation are at the bottom.\
(**3**) The right side is the visualization space. Any functions performed will trigger a message in the log window (**3a**). This window will also display any error messages. *Wallace v2.0.4* now allows the user to load multiple species. If multiple species are loaded, toggle and select between species using the species drop-down menu (**3b**).\
The visualization space includes several tabs (**3c**), including an interactive map, occurrence records table, results window, model and component guidance text windows, and a tab for saving outputs and the current session.\