From 65039a165df0bad0af64c6d757792bcd67c20ac8 Mon Sep 17 00:00:00 2001 From: Daniel Lopez Date: Wed, 6 Dec 2023 15:21:26 -0500 Subject: [PATCH] Add license text to .R files --- R/custom_modules.R | 23 +++++++++++++++++++++++ R/envs_ecoClimate.R | 23 +++++++++++++++++++++++ R/envs_userEnvs.R | 23 +++++++++++++++++++++++ R/envs_worldclim.R | 23 +++++++++++++++++++++++ R/espace_nicheOv.R | 23 +++++++++++++++++++++++ R/espace_occDens.R | 23 +++++++++++++++++++++++ R/espace_pca.R | 23 +++++++++++++++++++++++ R/helper_functions.R | 23 +++++++++++++++++++++++ R/model_bioclim.R | 23 +++++++++++++++++++++++ R/model_maxent.R | 23 +++++++++++++++++++++++ R/occs_paleoDb.R | 23 +++++++++++++++++++++++ R/occs_queryDb.R | 23 +++++++++++++++++++++++ R/occs_userOccs.R | 23 +++++++++++++++++++++++ R/part_partitionOccs.R | 23 +++++++++++++++++++++++ R/penvs_bgExtent.R | 23 +++++++++++++++++++++++ R/penvs_bgMask.R | 23 +++++++++++++++++++++++ R/penvs_bgSample.R | 23 +++++++++++++++++++++++ R/penvs_drawBgExtent.R | 23 +++++++++++++++++++++++ R/penvs_userBgExtent.R | 23 +++++++++++++++++++++++ R/poccs_removeByID.R | 23 +++++++++++++++++++++++ R/poccs_selectOccs.R | 23 +++++++++++++++++++++++ R/poccs_thinOccs.R | 23 +++++++++++++++++++++++ R/run_wallace.R | 23 +++++++++++++++++++++++ R/vis_bioclimPlot.R | 23 +++++++++++++++++++++++ R/wallace-package.R | 23 +++++++++++++++++++++++ R/xfer_area.R | 23 +++++++++++++++++++++++ R/xfer_draw.R | 23 +++++++++++++++++++++++ R/xfer_mess.R | 23 +++++++++++++++++++++++ R/xfer_time.R | 23 +++++++++++++++++++++++ R/xfer_userEnvs.R | 23 +++++++++++++++++++++++ R/xfer_userExtent.R | 23 +++++++++++++++++++++++ inst/shiny/global.R | 23 +++++++++++++++++++++++ inst/shiny/helpers.R | 23 +++++++++++++++++++++++ inst/shiny/modules/envs_ecoclimate.R | 23 +++++++++++++++++++++++ inst/shiny/modules/envs_userEnvs.R | 23 +++++++++++++++++++++++ inst/shiny/modules/envs_worldclim.R | 23 +++++++++++++++++++++++ inst/shiny/modules/espace_nicheOv.R | 23 +++++++++++++++++++++++ inst/shiny/modules/espace_occDens.R | 23 +++++++++++++++++++++++ inst/shiny/modules/espace_pca.R | 23 +++++++++++++++++++++++ inst/shiny/modules/model_bioclim.R | 23 +++++++++++++++++++++++ inst/shiny/modules/model_maxent.R | 23 +++++++++++++++++++++++ inst/shiny/modules/occs_paleoDb.R | 23 +++++++++++++++++++++++ inst/shiny/modules/occs_queryDb.R | 23 +++++++++++++++++++++++ inst/shiny/modules/occs_userOccs.R | 23 +++++++++++++++++++++++ inst/shiny/modules/part_nonSpat.R | 23 +++++++++++++++++++++++ inst/shiny/modules/part_spat.R | 23 +++++++++++++++++++++++ inst/shiny/modules/penvs_bgExtent.R | 23 +++++++++++++++++++++++ inst/shiny/modules/penvs_drawBgExtent.R | 23 +++++++++++++++++++++++ inst/shiny/modules/penvs_userBgExtent.R | 23 +++++++++++++++++++++++ inst/shiny/modules/poccs_removeByID.R | 23 +++++++++++++++++++++++ inst/shiny/modules/poccs_selectOccs.R | 23 +++++++++++++++++++++++ inst/shiny/modules/poccs_thinOccs.R | 23 +++++++++++++++++++++++ inst/shiny/modules/rep_markdown.R | 23 +++++++++++++++++++++++ inst/shiny/modules/rep_refPackages.R | 23 +++++++++++++++++++++++ inst/shiny/modules/rep_rmms.R | 23 +++++++++++++++++++++++ inst/shiny/modules/vis_bioclimPlot.R | 23 +++++++++++++++++++++++ inst/shiny/modules/vis_mapPreds.R | 23 +++++++++++++++++++++++ inst/shiny/modules/vis_maxentEvalPlot.R | 23 +++++++++++++++++++++++ inst/shiny/modules/vis_responsePlot.R | 23 +++++++++++++++++++++++ inst/shiny/modules/xfer_area.R | 23 +++++++++++++++++++++++ inst/shiny/modules/xfer_mess.R | 23 +++++++++++++++++++++++ inst/shiny/modules/xfer_time.R | 23 +++++++++++++++++++++++ inst/shiny/modules/xfer_user.R | 23 +++++++++++++++++++++++ inst/shiny/server.R | 23 +++++++++++++++++++++++ inst/shiny/ui.R | 23 +++++++++++++++++++++++ 65 files changed, 1495 insertions(+) diff --git a/R/custom_modules.R b/R/custom_modules.R index 3a0268275..efb6c4a2b 100644 --- a/R/custom_modules.R +++ b/R/custom_modules.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# custom_modules.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' Register a Wallace module #' #' Before running the Wallace application with \code{run_wallace()}, you can diff --git a/R/envs_ecoClimate.R b/R/envs_ecoClimate.R index ad6ad5110..298c91c99 100644 --- a/R/envs_ecoClimate.R +++ b/R/envs_ecoClimate.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# envs_ecoClimate.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title envs_ecoClimate Obtain ecoClimate variables #' @description download ecoClimate variables. See www.ecoclimate.org. diff --git a/R/envs_userEnvs.R b/R/envs_userEnvs.R index 0d42e7756..b2c52ea29 100644 --- a/R/envs_userEnvs.R +++ b/R/envs_userEnvs.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# envs_userEnvs.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' #' @title envs_userEnvs #' @description Load user provided rasters diff --git a/R/envs_worldclim.R b/R/envs_worldclim.R index 1914cf086..8d5f7c267 100644 --- a/R/envs_worldclim.R +++ b/R/envs_worldclim.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# envs_worldclim.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title envs_worldclim Obtain WorldClim variables #' @description download WorldClim variables. See www.worldclim.com. #' diff --git a/R/espace_nicheOv.R b/R/espace_nicheOv.R index bae7422a8..8d03a448b 100644 --- a/R/espace_nicheOv.R +++ b/R/espace_nicheOv.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# espace_nicheOv.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title espace_nicheOv Niche Overlap #' @description Function evaluates niche overlap between the two species for #' which the occurrence density grid was computed diff --git a/R/espace_occDens.R b/R/espace_occDens.R index 528b03b2c..ae7845b53 100644 --- a/R/espace_occDens.R +++ b/R/espace_occDens.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# espace_occDens.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title Occurrence density grid #' @description calculates the part of environmental space more densely diff --git a/R/espace_pca.R b/R/espace_pca.R index 7c27992f8..662206cec 100644 --- a/R/espace_pca.R +++ b/R/espace_pca.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# espace_pca.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title espace_pca Principal component analysis #' @description Principal component analysis to reduce dimensionality of #' environmental space diff --git a/R/helper_functions.R b/R/helper_functions.R index 518771de5..f40f706e7 100644 --- a/R/helper_functions.R +++ b/R/helper_functions.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# helper_functions.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# ####################### # # MISC # ####################### # diff --git a/R/model_bioclim.R b/R/model_bioclim.R index e3f70d593..7aa91812d 100644 --- a/R/model_bioclim.R +++ b/R/model_bioclim.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# model_bioclim.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title model_bioclim Generate Bioclim model #' @description The function generates a BIOCLIM model using diff --git a/R/model_maxent.R b/R/model_maxent.R index 9d33c891a..82c00e28c 100644 --- a/R/model_maxent.R +++ b/R/model_maxent.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# model_maxent.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title model_maxent Generate maxent.jar or maxnet model #' @description This functions generates maxent.jar or maxnet models using diff --git a/R/occs_paleoDb.R b/R/occs_paleoDb.R index 0bfdbd301..e340122e6 100644 --- a/R/occs_paleoDb.R +++ b/R/occs_paleoDb.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# occs_paleoDb.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' #' @title `occs_paleoDb` query paleobioDB database #' #' @description #' #' query paleobioDB database and returns the complete list of data, data with diff --git a/R/occs_queryDb.R b/R/occs_queryDb.R index d04823066..7f873e961 100644 --- a/R/occs_queryDb.R +++ b/R/occs_queryDb.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# occs_queryDb.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' occs_queryDb Query online database for species occurrence records. #' #' @description Queries a given database for occurrence data on the provided species diff --git a/R/occs_userOccs.R b/R/occs_userOccs.R index 9fbeac9e3..0032b0997 100644 --- a/R/occs_userOccs.R +++ b/R/occs_userOccs.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# occs_userOccs.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title occs_userOccs Loads user provided occurrence records #' @description #' Load user database with species occurrence records. Returns a list of lists, diff --git a/R/part_partitionOccs.R b/R/part_partitionOccs.R index 7dcdd433c..287f809cf 100644 --- a/R/part_partitionOccs.R +++ b/R/part_partitionOccs.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# part_partitionOccs.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title part_partitionOccs Partition occurrence data #' @description This function partitions occurrence data and background points diff --git a/R/penvs_bgExtent.R b/R/penvs_bgExtent.R index d96a7d2dd..4349cbb9c 100644 --- a/R/penvs_bgExtent.R +++ b/R/penvs_bgExtent.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# penvs_bgExtent.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title penvs_bgExtent Generate background extent #' @description This function generates a background area according to a user- diff --git a/R/penvs_bgMask.R b/R/penvs_bgMask.R index 7e5e30035..5e491719e 100644 --- a/R/penvs_bgMask.R +++ b/R/penvs_bgMask.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# penvs_bgMask.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title penvs_bgMask Mask environmental data #' @description This functions crops and masks the environmental data to the diff --git a/R/penvs_bgSample.R b/R/penvs_bgSample.R index 9eabf18af..514537a39 100644 --- a/R/penvs_bgSample.R +++ b/R/penvs_bgSample.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# penvs_bgSample.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title penvs_bgSample Sample background points #' @description This function samples background points from an area determined diff --git a/R/penvs_drawBgExtent.R b/R/penvs_drawBgExtent.R index 5adafa748..9475d3995 100644 --- a/R/penvs_drawBgExtent.R +++ b/R/penvs_drawBgExtent.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# penvs_drawBgExtent.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title penvs_drawBgExtent: Draw background extent #' @description This function generates a background area according to a user #' drawn polygon and provided buffer. diff --git a/R/penvs_userBgExtent.R b/R/penvs_userBgExtent.R index 1c9ecc363..ed5b37a2a 100644 --- a/R/penvs_userBgExtent.R +++ b/R/penvs_userBgExtent.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# penvs_userBgExtent.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title penvs_userBgExtent: user provided background extent #' @description This function generates a background area according to a user #' provided polygon and buffer. diff --git a/R/poccs_removeByID.R b/R/poccs_removeByID.R index 67fd19671..d650188ae 100644 --- a/R/poccs_removeByID.R +++ b/R/poccs_removeByID.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# poccs_removeByID.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title poccs_removeByID Remove occurrence by ID #' @description This function removes user selected occurrences by ID. diff --git a/R/poccs_selectOccs.R b/R/poccs_selectOccs.R index cd50a787c..e7b85513e 100644 --- a/R/poccs_selectOccs.R +++ b/R/poccs_selectOccs.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# poccs_selectOccs.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title poccs_selectOccs Remove occurrences outside of polygon #' @description This function removes occurrences outside of a user created #' polygon. diff --git a/R/poccs_thinOccs.R b/R/poccs_thinOccs.R index 8b1a09b33..96312fb6e 100644 --- a/R/poccs_thinOccs.R +++ b/R/poccs_thinOccs.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# poccs_thinOccs.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title poocs_thinOccs Thin occurrences #' @description The function thins the observed occurrences by a user provided diff --git a/R/run_wallace.R b/R/run_wallace.R index 94520d594..f8818109e 100644 --- a/R/run_wallace.R +++ b/R/run_wallace.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# run_wallace.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title Run \emph{Wallace} Application #' @description This function runs the \emph{Wallace} application in the user's #' default web browser. diff --git a/R/vis_bioclimPlot.R b/R/vis_bioclimPlot.R index e040ef0f5..019a19920 100644 --- a/R/vis_bioclimPlot.R +++ b/R/vis_bioclimPlot.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# vis_bioclimPlot.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title vis_bioclimPlot Visualize bivariate plot of BIOCLIM model #' @description diff --git a/R/wallace-package.R b/R/wallace-package.R index 16ce28758..674cf5349 100644 --- a/R/wallace-package.R +++ b/R/wallace-package.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# wallace-package.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @name wallace-package #' @aliases wallace #' @aliases wallace-package diff --git a/R/xfer_area.R b/R/xfer_area.R index 104772d65..6e09f81cc 100644 --- a/R/xfer_area.R +++ b/R/xfer_area.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# xfer_area.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title xfer_area Transfer model to a new area #' @description Function transfers the model generated in previous components to diff --git a/R/xfer_draw.R b/R/xfer_draw.R index be98e58b9..bb3e3d4a0 100644 --- a/R/xfer_draw.R +++ b/R/xfer_draw.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# xfer_draw.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title xfer_draw Draw extent of transfer #' @description This function creates a polygon object from coordinates of user diff --git a/R/xfer_mess.R b/R/xfer_mess.R index d8d033d9b..95b098411 100644 --- a/R/xfer_mess.R +++ b/R/xfer_mess.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# xfer_mess.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title xfer_mess generate MESS map for transferred raster #' @description This function generates a MESS map for the new variables for diff --git a/R/xfer_time.R b/R/xfer_time.R index 16ee0af8c..25b09951f 100644 --- a/R/xfer_time.R +++ b/R/xfer_time.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# xfer_time.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title xfer_time Transfer model to a new time #' @description Function transfers the model generated in previous components to diff --git a/R/xfer_userEnvs.R b/R/xfer_userEnvs.R index 7fe6ab583..4d32dcb8c 100644 --- a/R/xfer_userEnvs.R +++ b/R/xfer_userEnvs.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# xfer_userEnvs.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title xfer_userEnvs Transfer model to user specified area and time #' @description The function transfers the model generated in previous components #' to user uploaded environmental variables. diff --git a/R/xfer_userExtent.R b/R/xfer_userExtent.R index 08fd5e004..45c207453 100644 --- a/R/xfer_userExtent.R +++ b/R/xfer_userExtent.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# xfer_userExtent.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# #' @title xfer_userExtent: user provided extent of transfer #' @description This function generates an area of transfer according to a user #' provided polygon and buffer. diff --git a/inst/shiny/global.R b/inst/shiny/global.R index 6b1a9b884..e5561253e 100644 --- a/inst/shiny/global.R +++ b/inst/shiny/global.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# global.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# library(wallace) library(glue) diff --git a/inst/shiny/helpers.R b/inst/shiny/helpers.R index 480f93c30..e67ec76df 100644 --- a/inst/shiny/helpers.R +++ b/inst/shiny/helpers.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# helpers.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# uiTop <- function(mod_INFO) { modID <- mod_INFO$modID modName <- mod_INFO$modName diff --git a/inst/shiny/modules/envs_ecoclimate.R b/inst/shiny/modules/envs_ecoclimate.R index 50ec04089..e03f1b7e0 100644 --- a/inst/shiny/modules/envs_ecoclimate.R +++ b/inst/shiny/modules/envs_ecoclimate.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# envs_ecoclimate.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# envs_ecoclimate_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/envs_userEnvs.R b/inst/shiny/modules/envs_userEnvs.R index f18e25df7..c8e6a18f3 100644 --- a/inst/shiny/modules/envs_userEnvs.R +++ b/inst/shiny/modules/envs_userEnvs.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# envs_userEnvs.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# envs_userEnvs_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/envs_worldclim.R b/inst/shiny/modules/envs_worldclim.R index 1dbbb89fb..7e6159627 100644 --- a/inst/shiny/modules/envs_worldclim.R +++ b/inst/shiny/modules/envs_worldclim.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# envs_worldclim.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# envs_worldclim_module_ui <- function(id) { ns <- NS(id) tagList( diff --git a/inst/shiny/modules/espace_nicheOv.R b/inst/shiny/modules/espace_nicheOv.R index 527a0d897..93beaf24e 100644 --- a/inst/shiny/modules/espace_nicheOv.R +++ b/inst/shiny/modules/espace_nicheOv.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# espace_nicheOv.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# espace_nicheOv_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/espace_occDens.R b/inst/shiny/modules/espace_occDens.R index fb517ff61..2fe2e72ba 100644 --- a/inst/shiny/modules/espace_occDens.R +++ b/inst/shiny/modules/espace_occDens.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# espace_occDens.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# espace_occDens_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/espace_pca.R b/inst/shiny/modules/espace_pca.R index d0fad57f0..e9429688c 100644 --- a/inst/shiny/modules/espace_pca.R +++ b/inst/shiny/modules/espace_pca.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# espace_pca.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# espace_pca_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/model_bioclim.R b/inst/shiny/modules/model_bioclim.R index e3c5bdd9a..c401a62d2 100644 --- a/inst/shiny/modules/model_bioclim.R +++ b/inst/shiny/modules/model_bioclim.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# model_bioclim.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# model_bioclim_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/model_maxent.R b/inst/shiny/modules/model_maxent.R index 99af4ddd9..023112a3e 100644 --- a/inst/shiny/modules/model_maxent.R +++ b/inst/shiny/modules/model_maxent.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# model_maxent.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# model_maxent_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/occs_paleoDb.R b/inst/shiny/modules/occs_paleoDb.R index 9bc02a0ce..1016ee063 100644 --- a/inst/shiny/modules/occs_paleoDb.R +++ b/inst/shiny/modules/occs_paleoDb.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# occs_paleoDb.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# # occs_paleoDb_module_ui <- function(id) { # ns <- shiny::NS(id) # tagList( diff --git a/inst/shiny/modules/occs_queryDb.R b/inst/shiny/modules/occs_queryDb.R index fe816d014..c9ab86a81 100644 --- a/inst/shiny/modules/occs_queryDb.R +++ b/inst/shiny/modules/occs_queryDb.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# occs_queryDb.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# occs_queryDb_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/occs_userOccs.R b/inst/shiny/modules/occs_userOccs.R index 06aece88b..4ed478f79 100644 --- a/inst/shiny/modules/occs_userOccs.R +++ b/inst/shiny/modules/occs_userOccs.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# occs_userOccs.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# occs_userOccs_module_ui <- function(id) { ns <- NS(id) tagList( diff --git a/inst/shiny/modules/part_nonSpat.R b/inst/shiny/modules/part_nonSpat.R index daa76e5a3..5b6ac090f 100644 --- a/inst/shiny/modules/part_nonSpat.R +++ b/inst/shiny/modules/part_nonSpat.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# part_nonSpat.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# part_nonSpat_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/part_spat.R b/inst/shiny/modules/part_spat.R index 886a7a9bb..ff4ab7adb 100644 --- a/inst/shiny/modules/part_spat.R +++ b/inst/shiny/modules/part_spat.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# part_spat.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# part_spat_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/penvs_bgExtent.R b/inst/shiny/modules/penvs_bgExtent.R index 0b9db46f2..b3f755ca4 100644 --- a/inst/shiny/modules/penvs_bgExtent.R +++ b/inst/shiny/modules/penvs_bgExtent.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# penvs_bgExtent.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# penvs_bgExtent_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/penvs_drawBgExtent.R b/inst/shiny/modules/penvs_drawBgExtent.R index 30e9c871a..7c3d7145e 100644 --- a/inst/shiny/modules/penvs_drawBgExtent.R +++ b/inst/shiny/modules/penvs_drawBgExtent.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# penvs_drawBgExtent.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# penvs_drawBgExtent_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/penvs_userBgExtent.R b/inst/shiny/modules/penvs_userBgExtent.R index 5711943d0..dfd066dc4 100644 --- a/inst/shiny/modules/penvs_userBgExtent.R +++ b/inst/shiny/modules/penvs_userBgExtent.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# penvs_userBgExtent.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# penvs_userBgExtent_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/poccs_removeByID.R b/inst/shiny/modules/poccs_removeByID.R index 2013cdd63..e6158cfaa 100644 --- a/inst/shiny/modules/poccs_removeByID.R +++ b/inst/shiny/modules/poccs_removeByID.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# poccs_removeByID.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# poccs_removeByID_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/poccs_selectOccs.R b/inst/shiny/modules/poccs_selectOccs.R index e560f67b0..87838f3c5 100644 --- a/inst/shiny/modules/poccs_selectOccs.R +++ b/inst/shiny/modules/poccs_selectOccs.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# poccs_selectOccs.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# poccs_selectOccs_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/poccs_thinOccs.R b/inst/shiny/modules/poccs_thinOccs.R index 23a723850..c0540c3ad 100644 --- a/inst/shiny/modules/poccs_thinOccs.R +++ b/inst/shiny/modules/poccs_thinOccs.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# poccs_thinOccs.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# poccs_thinOccs_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/rep_markdown.R b/inst/shiny/modules/rep_markdown.R index 898435a3a..186d8757c 100644 --- a/inst/shiny/modules/rep_markdown.R +++ b/inst/shiny/modules/rep_markdown.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# rep_markdown.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# rep_markdown_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/rep_refPackages.R b/inst/shiny/modules/rep_refPackages.R index 43cb1693a..e1ce1c451 100644 --- a/inst/shiny/modules/rep_refPackages.R +++ b/inst/shiny/modules/rep_refPackages.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# rep_refPackages.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# rep_refPackages_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/rep_rmms.R b/inst/shiny/modules/rep_rmms.R index 8a4bd7050..8ddfd9fcc 100644 --- a/inst/shiny/modules/rep_rmms.R +++ b/inst/shiny/modules/rep_rmms.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# rep_rmms.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# rep_rmms_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/vis_bioclimPlot.R b/inst/shiny/modules/vis_bioclimPlot.R index 86efa5a6a..d72fefbe7 100644 --- a/inst/shiny/modules/vis_bioclimPlot.R +++ b/inst/shiny/modules/vis_bioclimPlot.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# vis_bioclimPlot.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# vis_bioclimPlot_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/vis_mapPreds.R b/inst/shiny/modules/vis_mapPreds.R index df37af386..be8a1f4fa 100644 --- a/inst/shiny/modules/vis_mapPreds.R +++ b/inst/shiny/modules/vis_mapPreds.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# vis_mapPreds.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# vis_mapPreds_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/vis_maxentEvalPlot.R b/inst/shiny/modules/vis_maxentEvalPlot.R index befee1a80..49c113d04 100644 --- a/inst/shiny/modules/vis_maxentEvalPlot.R +++ b/inst/shiny/modules/vis_maxentEvalPlot.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# vis_maxentEvalPlot.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# vis_maxentEvalPlot_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/vis_responsePlot.R b/inst/shiny/modules/vis_responsePlot.R index d829793ed..328594486 100644 --- a/inst/shiny/modules/vis_responsePlot.R +++ b/inst/shiny/modules/vis_responsePlot.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# vis_responsePlot.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# vis_responsePlot_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/xfer_area.R b/inst/shiny/modules/xfer_area.R index 358acf413..3660bc5ee 100644 --- a/inst/shiny/modules/xfer_area.R +++ b/inst/shiny/modules/xfer_area.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# xfer_area.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# xfer_area_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/xfer_mess.R b/inst/shiny/modules/xfer_mess.R index 02e7e992d..079e738cd 100644 --- a/inst/shiny/modules/xfer_mess.R +++ b/inst/shiny/modules/xfer_mess.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# xfer_mess.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# xfer_mess_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/xfer_time.R b/inst/shiny/modules/xfer_time.R index 47b4e8190..7aa9fe836 100644 --- a/inst/shiny/modules/xfer_time.R +++ b/inst/shiny/modules/xfer_time.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# xfer_time.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# xfer_time_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/modules/xfer_user.R b/inst/shiny/modules/xfer_user.R index d79fd77e9..5aca141c8 100644 --- a/inst/shiny/modules/xfer_user.R +++ b/inst/shiny/modules/xfer_user.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# xfer_user.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# xfer_user_module_ui <- function(id) { ns <- shiny::NS(id) tagList( diff --git a/inst/shiny/server.R b/inst/shiny/server.R index 81b6be861..d41bfbe5a 100644 --- a/inst/shiny/server.R +++ b/inst/shiny/server.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# server.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# function(input, output, session) { ########################## # # REACTIVE VALUES LISTS #### diff --git a/inst/shiny/ui.R b/inst/shiny/ui.R index e61021172..5fb4301ec 100644 --- a/inst/shiny/ui.R +++ b/inst/shiny/ui.R @@ -1,3 +1,26 @@ +# Wallace EcoMod: a flexible platform for reproducible modeling of +# species niches and distributions. +# +# ui.R +# File author: Wallace EcoMod Dev Team. 2023. +# -------------------------------------------------------------------------- +# This file is part of the Wallace EcoMod application +# (hereafter “Wallace”). +# +# Wallace is free software: you can redistribute it and/or modify +# it under the terms of the GNU General Public License as published by +# the Free Software Foundation, either version 2 of the License, +# or (at your option) any later version. +# +# Wallace is distributed in the hope that it will be useful, +# but WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +# GNU General Public License for more details. +# +# You should have received a copy of the GNU General Public License +# along with Wallace. If not, see . +# -------------------------------------------------------------------------- +# resourcePath <- system.file("shiny", "www", package = "wallace") shiny::addResourcePath("wallaceres", resourcePath)