Story: ImageJ Plugin MVP

[AvocadoMoon]

The theme for this story is to have a minimal viable product for the ImageJ plugin which works with the S3 service hosted on VCell's server that presents N5 data to be consumed.

Requirements

• Open remotely stored N5 files presented by VCell's servers
• Have these opened files use the ImageJ native image processing library that way all ImageJ functions are available
• GUI that's simple to use and responsive

Tasks

• JFrames dependent on the main JFrame #8
• ImageJ Freezing #10
• Initalize VCell Plugin Enviroment #3
• Plugin with s3 service #12
• Opt Into Loading Whole Images VCell Plugin #14
• View Simulation Results Helper Menu #26
• Gracefully Handle Errors Fiji Plugin #16
• G UI quirks #17
• Basic Image Handling #5
• Automated ImageJ Publish #23
• Close Remote File JDialog and Add Refresh Datasets Button #20
• Rename the plugin in ImageJ menu
• Button to show the most recent exported dataset
• Get Github Actions to Publish IJ Plugin #30
• Table Displaying Available Simulation Results #27

Future

• Reduce Test Resource Size and Number of Files #9
• Interprocess Communication #13
• Automated Image Processing #18
• Progress Bar When Loading Virtual Image #21
• Example ImageJ Script with N5 Data and Documentation #15

[AvocadoMoon]

Change menu name of plugin in Image from N5 Viewer to something more intuitive. More metadata for the datasets, not just the names allowing for better choice. If they forget the name then they are screwed, enough information to know where you can find the simulation back on VCell, maybe a button that can be pressed to show the details or automatically do it on clicking dataset.