Name		Name	Last commit message	Last commit date
parent directory ..
bruker_preprocessing		bruker_preprocessing
freesurfer		freesurfer
lcmodel		lcmodel
repro-brats		repro-brats
tutorials		tutorials
README.md		README.md

README.md

Examples: Tutorials, WorkShop Materials & Use-Cases

Tutorials

tutorials/demo-vipsession.ipynb : Notebook showing basic use of VipSession.
tutorials/demo-multiple-sessions.py : Python script optimizing the use of several VipSession instances on the same dataset.

Workshop Materials

[MICCAI 2023] repro-brats/: Notebooks for studying the reproducibility of a tumor segmentation pipeline.

Use Cases

bruker_preprocessing/: Preprocessing pipeline for use in the Pilot platform (CREATIS lab).
freesurfer: Freesurfer execution from command-line (contains a Git submodule).

Submodules

To init the Git submodules, run:

git submodule update --init --recursive