diff --git a/.copier-answers.yml b/.copier-answers.yml index cf78cf5..c85b04f 100644 --- a/.copier-answers.yml +++ b/.copier-answers.yml @@ -11,4 +11,3 @@ project_short_description: A JupyterLab extension. python_name: tvb_ext_ontology repository: https://github.com/the-virtual-brain/tvb-ext-ontology test: true - diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index 816e219..867f524 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -15,83 +15,83 @@ jobs: runs-on: ubuntu-latest steps: - - name: Checkout - uses: actions/checkout@v4 - - - name: Base Setup - uses: jupyterlab/maintainer-tools/.github/actions/base-setup@v1 - - - name: Install dependencies - run: python -m pip install -U "jupyterlab>=4.0.0,<5" - - - name: Lint the extension - run: | - set -eux - jlpm - jlpm run lint:check - - - name: Test the extension - run: | - set -eux - jlpm run test - - - name: Build the extension - run: | - set -eux - python -m pip install .[test] - - pytest -vv -r ap --cov tvb_ext_ontology - jupyter server extension list - jupyter server extension list 2>&1 | grep -ie "tvb_ext_ontology.*OK" - - jupyter labextension list - jupyter labextension list 2>&1 | grep -ie "tvb-ext-ontology.*OK" - python -m jupyterlab.browser_check - - - name: Package the extension - run: | - set -eux - - pip install build - python -m build - pip uninstall -y "tvb_ext_ontology" jupyterlab - - - name: Upload extension packages - uses: actions/upload-artifact@v4 - with: - name: extension-artifacts - path: dist/tvb_ext_ontology* - if-no-files-found: error + - name: Checkout + uses: actions/checkout@v4 + + - name: Base Setup + uses: jupyterlab/maintainer-tools/.github/actions/base-setup@v1 + + - name: Install dependencies + run: python -m pip install -U "jupyterlab>=4.0.0,<5" + + - name: Lint the extension + run: | + set -eux + jlpm + jlpm run lint:check + + - name: Test the extension + run: | + set -eux + jlpm run test + + - name: Build the extension + run: | + set -eux + python -m pip install .[test] + + pytest -vv -r ap --cov tvb_ext_ontology + jupyter server extension list + jupyter server extension list 2>&1 | grep -ie "tvb_ext_ontology.*OK" + + jupyter labextension list + jupyter labextension list 2>&1 | grep -ie "tvb-ext-ontology.*OK" + python -m jupyterlab.browser_check + + - name: Package the extension + run: | + set -eux + + pip install build + python -m build + pip uninstall -y "tvb_ext_ontology" jupyterlab + + - name: Upload extension packages + uses: actions/upload-artifact@v4 + with: + name: extension-artifacts + path: dist/tvb_ext_ontology* + if-no-files-found: error test_isolated: needs: build runs-on: ubuntu-latest steps: - - name: Install Python - uses: actions/setup-python@v5 - with: - python-version: '3.9' - architecture: 'x64' - - uses: actions/download-artifact@v4 - with: - name: extension-artifacts - - name: Install and Test - run: | - set -eux - # Remove NodeJS, twice to take care of system and locally installed node versions. - sudo rm -rf $(which node) - sudo rm -rf $(which node) - - pip install "jupyterlab>=4.0.0,<5" tvb_ext_ontology*.whl - - - jupyter server extension list - jupyter server extension list 2>&1 | grep -ie "tvb_ext_ontology.*OK" - - jupyter labextension list - jupyter labextension list 2>&1 | grep -ie "tvb-ext-ontology.*OK" - python -m jupyterlab.browser_check --no-browser-test + - name: Install Python + uses: actions/setup-python@v5 + with: + python-version: '3.9' + architecture: 'x64' + - uses: actions/download-artifact@v4 + with: + name: extension-artifacts + - name: Install and Test + run: | + set -eux + # Remove NodeJS, twice to take care of system and locally installed node versions. + sudo rm -rf $(which node) + sudo rm -rf $(which node) + + pip install "jupyterlab>=4.0.0,<5" tvb_ext_ontology*.whl + + + jupyter server extension list + jupyter server extension list 2>&1 | grep -ie "tvb_ext_ontology.*OK" + + jupyter labextension list + jupyter labextension list 2>&1 | grep -ie "tvb-ext-ontology.*OK" + python -m jupyterlab.browser_check --no-browser-test integration-tests: name: Integration tests @@ -102,53 +102,53 @@ jobs: PLAYWRIGHT_BROWSERS_PATH: ${{ github.workspace }}/pw-browsers steps: - - name: Checkout - uses: actions/checkout@v4 - - - name: Base Setup - uses: jupyterlab/maintainer-tools/.github/actions/base-setup@v1 - - - name: Download extension package - uses: actions/download-artifact@v4 - with: - name: extension-artifacts - - - name: Install the extension - run: | - set -eux - python -m pip install "jupyterlab>=4.0.0,<5" tvb_ext_ontology*.whl - - - name: Install dependencies - working-directory: ui-tests - env: - YARN_ENABLE_IMMUTABLE_INSTALLS: 0 - PLAYWRIGHT_SKIP_BROWSER_DOWNLOAD: 1 - run: jlpm install - - - name: Set up browser cache - uses: actions/cache@v4 - with: - path: | - ${{ github.workspace }}/pw-browsers - key: ${{ runner.os }}-${{ hashFiles('ui-tests/yarn.lock') }} - - - name: Install browser - run: jlpm playwright install chromium - working-directory: ui-tests - - - name: Execute integration tests - working-directory: ui-tests - run: | - jlpm playwright test - - - name: Upload Playwright Test report - if: always() - uses: actions/upload-artifact@v4 - with: - name: tvb_ext_ontology-playwright-tests - path: | - ui-tests/test-results - ui-tests/playwright-report + - name: Checkout + uses: actions/checkout@v4 + + - name: Base Setup + uses: jupyterlab/maintainer-tools/.github/actions/base-setup@v1 + + - name: Download extension package + uses: actions/download-artifact@v4 + with: + name: extension-artifacts + + - name: Install the extension + run: | + set -eux + python -m pip install "jupyterlab>=4.0.0,<5" tvb_ext_ontology*.whl + + - name: Install dependencies + working-directory: ui-tests + env: + YARN_ENABLE_IMMUTABLE_INSTALLS: 0 + PLAYWRIGHT_SKIP_BROWSER_DOWNLOAD: 1 + run: jlpm install + + - name: Set up browser cache + uses: actions/cache@v4 + with: + path: | + ${{ github.workspace }}/pw-browsers + key: ${{ runner.os }}-${{ hashFiles('ui-tests/yarn.lock') }} + + - name: Install browser + run: jlpm playwright install chromium + working-directory: ui-tests + + - name: Execute integration tests + working-directory: ui-tests + run: | + jlpm playwright test + + - name: Upload Playwright Test report + if: always() + uses: actions/upload-artifact@v4 + with: + name: tvb_ext_ontology-playwright-tests + path: | + ui-tests/test-results + ui-tests/playwright-report check_links: name: Check Links diff --git a/.github/workflows/check-release.yml b/.github/workflows/check-release.yml index 02f9e0a..e95709d 100644 --- a/.github/workflows/check-release.yml +++ b/.github/workflows/check-release.yml @@ -1,9 +1,9 @@ name: Check Release on: push: - branches: ["main"] + branches: ['main'] pull_request: - branches: ["*"] + branches: ['*'] concurrency: group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} @@ -20,7 +20,6 @@ jobs: - name: Check Release uses: jupyter-server/jupyter_releaser/.github/actions/check-release@v2 with: - token: ${{ secrets.GITHUB_TOKEN }} - name: Upload Distributions diff --git a/.github/workflows/prep-release.yml b/.github/workflows/prep-release.yml index 67ecd98..724b555 100644 --- a/.github/workflows/prep-release.yml +++ b/.github/workflows/prep-release.yml @@ -1,26 +1,26 @@ -name: "Step 1: Prep Release" +name: 'Step 1: Prep Release' on: workflow_dispatch: inputs: version_spec: - description: "New Version Specifier" - default: "next" + description: 'New Version Specifier' + default: 'next' required: false branch: - description: "The branch to target" + description: 'The branch to target' required: false post_version_spec: - description: "Post Version Specifier" + description: 'Post Version Specifier' required: false # silent: # description: "Set a placeholder in the changelog and don't publish the release." # required: false # type: boolean since: - description: "Use PRs with activity since this date or git reference" + description: 'Use PRs with activity since this date or git reference' required: false since_last_stable: - description: "Use PRs with activity since the last stable git tag" + description: 'Use PRs with activity since the last stable git tag' required: false type: boolean jobs: @@ -43,6 +43,6 @@ jobs: since: ${{ github.event.inputs.since }} since_last_stable: ${{ github.event.inputs.since_last_stable }} - - name: "** Next Step **" + - name: '** Next Step **' run: | echo "Optional): Review Draft Release: ${{ steps.prep-release.outputs.release_url }}" diff --git a/.github/workflows/publish-release.yml b/.github/workflows/publish-release.yml index c188106..47afc21 100644 --- a/.github/workflows/publish-release.yml +++ b/.github/workflows/publish-release.yml @@ -1,15 +1,15 @@ -name: "Step 2: Publish Release" +name: 'Step 2: Publish Release' on: workflow_dispatch: inputs: branch: - description: "The target branch" + description: 'The target branch' required: false release_url: - description: "The URL of the draft GitHub release" + description: 'The URL of the draft GitHub release' required: false steps_to_skip: - description: "Comma separated list of steps to skip" + description: 'Comma separated list of steps to skip' required: false jobs: @@ -45,13 +45,13 @@ jobs: token: ${{ steps.app-token.outputs.token }} release_url: ${{ steps.populate-release.outputs.release_url }} - - name: "** Next Step **" + - name: '** Next Step **' if: ${{ success() }} run: | echo "Verify the final release" echo ${{ steps.finalize-release.outputs.release_url }} - - name: "** Failure Message **" + - name: '** Failure Message **' if: ${{ failure() }} run: | echo "Failed to Publish the Draft Release Url:" diff --git a/.github/workflows/update-integration-tests.yml b/.github/workflows/update-integration-tests.yml index 1cae0ed..6fdb6bf 100644 --- a/.github/workflows/update-integration-tests.yml +++ b/.github/workflows/update-integration-tests.yml @@ -17,7 +17,6 @@ jobs: github.event.issue.author_association == 'MEMBER' ) && github.event.issue.pull_request && contains(github.event.comment.body, 'please update snapshots') runs-on: ubuntu-latest - steps: - name: React to the triggering comment run: | diff --git a/package.json b/package.json index f6d0168..7a46d5d 100644 --- a/package.json +++ b/package.json @@ -59,6 +59,7 @@ "@jupyterlab/application": "^4.2.4", "@jupyterlab/apputils": "^4.3.4", "@jupyterlab/coreutils": "^6.0.0", + "@jupyterlab/galata": "^5.2.4", "@jupyterlab/launcher": "^4.2.4", "@jupyterlab/services": "^7.0.0", "@lumino/widgets": "^2.4.0" diff --git a/ui-tests/tests/tvb_ext_ontology.spec.ts b/ui-tests/tests/tvb_ext_ontology.spec.ts index fe9a84d..ee56238 100644 --- a/ui-tests/tests/tvb_ext_ontology.spec.ts +++ b/ui-tests/tests/tvb_ext_ontology.spec.ts @@ -16,6 +16,8 @@ test('should emit an activation console message', async ({ page }) => { await page.goto(); expect( - logs.filter(s => s === 'JupyterLab extension tvb-ext-ontology is activated!') + logs.filter( + s => s === 'JupyterLab extension tvb-ext-ontology is activated!' + ) ).toHaveLength(1); }); diff --git a/yarn.lock b/yarn.lock index 8ccaaee..03febc8 100644 --- a/yarn.lock +++ b/yarn.lock @@ -2301,6 +2301,31 @@ __metadata: languageName: node linkType: hard +"@jupyterlab/console@npm:^4.2.4": + version: 4.2.4 + resolution: "@jupyterlab/console@npm:4.2.4" + dependencies: + "@jupyter/ydoc": ^2.0.1 + "@jupyterlab/apputils": ^4.3.4 + "@jupyterlab/cells": ^4.2.4 + "@jupyterlab/codeeditor": ^4.2.4 + "@jupyterlab/coreutils": ^6.2.4 + "@jupyterlab/nbformat": ^4.2.4 + "@jupyterlab/observables": ^5.2.4 + "@jupyterlab/rendermime": ^4.2.4 + "@jupyterlab/services": ^7.2.4 + "@jupyterlab/translation": ^4.2.4 + "@jupyterlab/ui-components": ^4.2.4 + "@lumino/coreutils": ^2.1.2 + "@lumino/disposable": ^2.1.2 + "@lumino/dragdrop": ^2.1.4 + "@lumino/messaging": ^2.0.1 + "@lumino/signaling": ^2.1.2 + "@lumino/widgets": ^2.3.2 + checksum: 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