From 3e7c9938d56301335292a0461c600c0afb704678 Mon Sep 17 00:00:00 2001 From: Cole Brookson Date: Tue, 28 Nov 2023 22:09:13 -0500 Subject: [PATCH] julia call missing somehow? --- .github/workflows/main.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 06c1145..06d5685 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -33,7 +33,7 @@ jobs: - name: dependencies!!!! run: | sudo apt-get install libcurl4-openssl-dev libarchive-dev - sudo Rscript -e 'install.packages(c("taxize", "tidyverse", "RCurl", "readr", "vroom", "magrittr", "fs", "data.table", "zip", "rglobi", "lubridate", "R.utils", "here"), repos = "http://cran.us.r-project.org")' + sudo Rscript -e 'install.packages(c("taxize", "tidyverse", "RCurl", "readr", "vroom", "magrittr", "fs", "data.table", "zip", "rglobi", "lubridate", "R.utils", "here", "JuliaCall"), repos = "http://cran.us.r-project.org")' - name: Download GenBank run: | Rscript -e 'source("Code/02_1a_Download GenBank.R")' @@ -59,7 +59,7 @@ jobs: - name: dependencies!!!! run: | sudo apt-get install libcurl4-openssl-dev libarchive-dev - sudo Rscript -e 'install.packages(c("taxize", "tidyverse", "RCurl", "readr", "vroom", "magrittr", "fs", "data.table", "zip", "devtools", "lubridate", "here"), repos = "http://cran.us.r-project.org")' + sudo Rscript -e 'install.packages(c("taxize", "tidyverse", "RCurl", "readr", "vroom", "magrittr", "fs", "data.table", "zip", "devtools", "lubridate", "here", "JuliaCall"), repos = "http://cran.us.r-project.org")' sudo Rscript -e 'devtools::install_github("ropensci/rglobi")' - name: Setup Julia uses: julia-actions/setup-julia@v1 @@ -93,7 +93,7 @@ jobs: - name: dependencies!!! run: | sudo apt-get install libcurl4-openssl-dev libarchive-dev libharfbuzz-dev libfribidi-dev - sudo Rscript -e 'install.packages(c("taxize", "tidyverse", "RCurl", "readr", "vroom", "magrittr", "fs", "data.table", "R.utils", "zip", "rglobi", "lubridate", "tidyft", "here"), repos = "http://cran.us.r-project.org")' + sudo Rscript -e 'install.packages(c("taxize", "tidyverse", "RCurl", "readr", "vroom", "magrittr", "fs", "data.table", "R.utils", "zip", "rglobi", "lubridate", "tidyft", "here", "JuliaCall"), repos = "http://cran.us.r-project.org")' - name: Get GenBank uses: actions/download-artifact@v2 with: