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how to FitMG94 reports trees scaled on dS, dN and dN/dS #41

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sushidaren opened this issue Jun 21, 2023 · 1 comment
Open

how to FitMG94 reports trees scaled on dS, dN and dN/dS #41

sushidaren opened this issue Jun 21, 2023 · 1 comment

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@sushidaren
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Dear Dr. Pond,
This is Xiaojuan Li，I have calculate dn and ds using FitMG94, which reported trees scaled on expected number of synonymous and non synonymous substitutions per codon. But I also need trees scaled on ds and dn, and dn/ds，thus could you please help me how to extract dS, dN and dN/dS.
Thank you for your consideration.
Sincerely
Xiaojuan Li
@spond
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spond commented Jul 3, 2023

Dear @sushidaren,

Look inside the JSON file produced by FitMG94.bf.

image

Best,
Sergei

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@spond @sushidaren