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RSV: mine subtypes from NCBI GenBank #567

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atc3 opened this issue Sep 1, 2022 · 0 comments
Open

RSV: mine subtypes from NCBI GenBank #567

atc3 opened this issue Sep 1, 2022 · 0 comments
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@atc3
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atc3 commented Sep 1, 2022

Some sequences that don't include G are assigned a genotype (A, B) by the submitter, and it's clearly marked under the "source" field of the "FEATURES" section in the GenBank entry. For example: JF905542

Not sure if we can pull this data from the NCBI Virus API but if we can, we should look for this data and substitute it in when our genotype alignments fail

@atc3 atc3 added the data label Sep 1, 2022
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