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Filter SNVs by substitution, insertion, deletion #238

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atc3 opened this issue Sep 10, 2020 · 1 comment
Open

Filter SNVs by substitution, insertion, deletion #238

atc3 opened this issue Sep 10, 2020 · 1 comment
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@atc3
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atc3 commented Sep 10, 2020

Maybe put under the "Group by SNV" radio button?

@atc3 atc3 added the UI User Interface label Sep 10, 2020
@atc3 atc3 self-assigned this Sep 10, 2020
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atc3 commented Mar 3, 2021

More details for this:

  • For now, just have a group of checkboxes for "substitution", "insertion", and "deletion"
  • Make this a new component and put it under the GroupBySelect component
  • Only show the component in we're in "SNV" mode
  • Make new observable attributes for this in configStore, and pass it along to the server as part of the query requests
  • In the server, inside query.py, add SQL expressions to filter by the passed SNV filters. To filter for insertions, check that the ref field is blank (-). For deletions, check that the alt field is blank (-). For substitutions, neither can be blank.

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