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Commits on Dec 10, 2024

• Switch from list to deque for faster inserts and pops during mutation separation (#653)

  atc3

  authored
  52ce705

Commits on Aug 2, 2024

• Categorize passage metadata (#652)

  Show description for ef095bd
  atc3

  authored
  ef095bd

Commits on Jul 29, 2024

• Bump to v2.7.8-rc1

  atc3

  committed
  27ca107

• Mutation separation (#651)

  Show description for cd329ec
  atc3

  authored
  cd329ec

Commits on Jul 28, 2024

• Metadata and filter for N subtype in flu (#650)

  Show description for 73fa89e
  atc3

  authored
  73fa89e

Commits on Jun 21, 2024

• Fix GenBank date format (#649)

  atc3

  authored
  45a6c7c

Commits on May 23, 2024

• Adjust GenBank download chunks to not surpass today's date (#648)

  atc3

  authored
  d40d998

• Date cutoff fixes for GenBank pipelines (#647)

  Show description for e9ab1f1
  atc3

  authored
  e9ab1f1

Commits on May 19, 2024

• Tolerate frameshifting indels as long as they are resolved (#646)

  Show description for da30d62
  atc3

  authored
  da30d62

Commits on May 11, 2024

• Add H10 and new H7 ref (#645)

  Show description for ecdd12b
  atc3

  authored
  ecdd12b

Commits on Apr 4, 2024

• Flu Genbank release (#644)

  Show description for 8ae0710
  atc3

  authored
  8ae0710

Commits on Feb 24, 2024

• v2.7.4 Flu patches and bug fixes (#643)

  Show description for 67e1c70
  atc3

  authored
  67e1c70

• Separate download for FASTA files via NCBI virus (#640)

  Show description for d61f167
  atc3

  authored
  d61f167

• GenBank Flu site release (#630)

  Show description for 7df2e91
  atc3

  authored
  7df2e91

Commits on Feb 1, 2024

• Hotfix for requests that don't explicitly specify sequence quality filters (#642)

  Show description for 0b487de
  atc3

  authored
  0b487de

• Bump version to v2.7.6-qual-rc2

  atc3

  committed
  890ada1

• Fix: fill missing surveillance counts with 0 instead of lirping between known values (#641)

  atc3

  authored
  c2932d1

Commits on Jan 29, 2024

• Adaptable MOTD (#639)

  Show description for 1aaf38b
  atc3

  authored
  1aaf38b

Commits on Jan 17, 2024

• Truncated main workflow (#638)

  Show description for 2b208d3
  atc3

  authored
  2b208d3

Commits on Jan 15, 2024

• Add sequence quality as metadata (#636)

  Show description for c389d1e
  atc3

  authored
  c389d1e

Commits on Dec 31, 2023

• Hotfix - explicitly read latin-1 encoding from fasta files (#637)

  atc3

  authored
  6c13d01

Commits on Oct 31, 2023

• PANGO annotations for SARS2 GISAID workflow (#631)

  Show description for f039ad2
  atc3

  authored
  f039ad2

Commits on Aug 19, 2023

• Update RSV copy (#629)

  Show description for 6fe2047
  atc3

  authored
  6fe2047

• v2.7.4 - Flu data update (#622)

  Show description for cb8a136
  atc3

  authored
  cb8a136

Commits on Jul 27, 2023

• Uncompress SARS2 feed file on the fly to save disk space (#623)

  Show description for 1b52c3a
  atc3

  authored
  1b52c3a

Commits on May 1, 2023

• New flu subtypes (H5NX, H7NX, H9NX) (#620)

  Show description for 4598e5a
  atc3

  authored
  4598e5a

• Add more flu references (#607)

  Show description for c91fdb3
  atc3

  authored
  c91fdb3

Commits on Apr 30, 2023

• Add GCS CORS config (#618)

  Show description for f769b7c
  atc3

  authored
  f769b7c

• Post-hoc residue numbering adjustments (#617)

  Show description for c4de7e2
  atc3

  authored
  c4de7e2

Commits on Apr 19, 2023

• Server hotfixes - 230419 (#616)

  Show description for 2375d52
  atc3

  authored
  2375d52

• Mutation Frequency Report (#615)

  Show description for 81e48f1
  atc3

  authored
  81e48f1

• Revert "Bump vega-functions from 5.13.0 to 5.13.1 (#608)" (#612)

  Show description for 9925dcb
  atc3

  authored
  9925dcb

• Bump vega-functions from 5.13.0 to 5.13.1 (#608)

  Show description for 2e58e9e
  dependabot[bot]

  authored
  2e58e9e

• Bump to version v2.7.3

  atc3

  committed
  d5690fb

• Bugfix - Primer queries (#611)

  Show description for 4d68557
  atc3

  authored
  4d68557

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