skysat_ctrack.pbs

#PBS -S /bin/csh

#Can be run interactively
#qsub -N 169823_177845 -v pair=WV01_20110927_1020010016982300_1020010017784500 ~/bin/singlepair.pbs

#Export environmental variables to batch job
#PBS -V

#Join stdout and stderr
#PBS -j oe

#Queue name
#PBS -q long

#Resources
#PBS -l select=1:model=bro_ele,walltime=6:00:00

#Mail options
#PBS -m abe

#Group ID
# #This was NESSF
# #PBS -W group_list=s1271
# #Arendt
# #PBS -W group_list=s1768
# #FINESST
## PBS -W group_list=s3224
# #HMA2
# PBS -W group_list=s2407
#Rerunnable (y/n)
#PBS -r n

#Check to make sure we're given an input pair

unalias cd

if ($?PBS_O_WORKDIR) then
    cd $PBS_O_WORKDIR
else
    setenv PBS_O_WORKDIR `pwd`
endif


set ts = `date +%Y%m%d_%H%M`
set logdir = $PBS_O_WORKDIR/log
if (! -d $logdir) mkdir $logdir
set jobid = `echo $PBS_JOBID | awk -F'.' '{print $1}'`
set pair = "skysat_ba"
set logfile = $logdir/${pair}_${ts}_${jobid}.log

echo $logfile

#Wrapper script to run ASP 
#set script = ./skysat_hardcode.sh
#set script = ./bundle_adjust_skysat.sh
#set script = /nobackupp11/sbhusha1/sw/wv_stereo_processing/scripts/new_dg_stereo_SGM.sh 

#Create a local copy of script in output directory, for reference
#set script_cp = $pair/${script:t:r}_${jobid}.${script:e}
#cp -pv $script $script_cp

echo "Current directory is:"
pwd
echo

#set rpcdem = ../stack_all/*gaussfill-tile-0.tif
#set rpcdem = /nobackup/deshean/snowex/stereo/gm/orig_products/demcoreg_ref_ASO_dsm/gm_8m_trans-tile-0_gaussfill-tile-0.tif
#set rpcdem = /nobackup/deshean/salardeuni/20190727_sdi_x/rename/P1BS/sdu_x_3697m_dem.tif

#This was for rerunning with updated rpcdem
if (! $?rpcdem) then
    set rpcdem = ""
endif

#bash $script >& $logfile
#$script_cp $pair $rpcdem $resol >& $logfile

#$script_cp $pair >& $logfile

parallel --progress -j 40 < $job_fn >& $logfile