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Single cell subdomain: category reorganization #934

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merged 1 commit into from
Oct 6, 2023
Merged

Single cell subdomain: category reorganization #934

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6 changes: 5 additions & 1 deletion templates/galaxy/config/global_host_filters.py.j2
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Original file line number Diff line number Diff line change
Expand Up @@ -95,6 +95,11 @@ DOMAIN_SECTIONS = {
"fastq_quality_control",
"sam_bam_manipulation",
"graph_display_data",
"hca_sc_monocle3_tools",
"hca_sc_garnett_tools",
"hca_sc_label_analysis_tools",
"hca_sc_scpred_tools",
"hca_sc_scmap_tools",
"hca_sc_scanpy_tools",
"hca_sc_sc3_tools",
"hca_sc_sccaf_tools",
Expand All @@ -104,7 +109,6 @@ DOMAIN_SECTIONS = {
"single-cell-section-scdata",
"single-cell-section-scanpy",
"single-cell-section-raceid",
"single-cell-section-cell-annotation",
"single-cell-section-cell-multiomics",
"single-cell-section-cell-inference",
"single-cell-section-cell-spatial",
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21 changes: 9 additions & 12 deletions templates/galaxy/config/tool_conf.xml.j2
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Original file line number Diff line number Diff line change
Expand Up @@ -282,7 +282,7 @@
</section>
<section id="single-cell-section-raceid" name="RaceID">
</section>
<section id="single-cell-section-cell-annotation" name="Automated cell annotation">
<section id="hca_sc_monocle3_tools" name="Monocle3">
</section>
<section id="single-cell-section-cell-multiomics" name="Multiomics">
</section>
Expand All @@ -299,22 +299,19 @@
<section id="hca_sc_sc3_tools" name="SC3">
</section>
<section id="hca_sc_scanpy_tools" name="HCA-Scanpy">
</section>
<section id="hca_sc_monocle3_tools" name="Monocle3">
</section>
<section id="hca_sc_scater_tools" name="Scater">
</section>
<section id="hca_sc_scmap_tools" name="SCMap - scRNAseq cell type classification">
</section>
<section id="hca_sc_scpred_tools" name="ScPred - scRNAseq cell type classification">
<section id="hca_sc_scater_tools" name="Scater">
</section>
<section id="hca_sc_garnett_tools" name="Garnett - scRNAseq cell type classification">
<section id="hca_sc_sccaf_tools" name="SCCAF">
</section>
<section id="hca_sc_label_analysis_tools" name="CellTypeScan - cell type classification analysis">
<label id="single-cell-label-automated-cell-annotation" text="Automated cell annotation" />
<section id="hca_sc_scmap_tools" name="SCMap">
</section>
<section id="hca_sc_sccaf_tools" name="SCCAF">
<section id="hca_sc_scpred_tools" name="ScPred">
</section>
<section id="hca_sc_garnett_tools" name="Garnett">
</section>
<section id="hca_sc_utils_viz" name="Single Cell Utils and Viz">
<section id="hca_sc_label_analysis_tools" name="CellTypeScan">
</section>
<label id="genomics_toolkits_label" text="Genomics Toolkits"/>
<section id="picard" name="Picard" version="">
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