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paragraph-footwork.yml
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paragraph-footwork.yml
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unique-id: paragraph-footwork
phe-label: V-21MAY-02
alternate-names:
- C.36
belongs-to-lineage:
- PANGO: C.36.3
description: This variant is reported in multiple countries and has been seen to be expanding since the beginning of April.
information-sources:
- https://github.com/cov-lineages/pango-designation/issues/80
variants:
- amino-acid-change: D217N
codon-change: GAT-AAT
gene: ORF1ab
one-based-reference-position: 9203
predicted-effect: non-synonymous
protein: nsp4
protein-codon-position: 217
reference-base: G
type: SNP
variant-base: A
- amino-acid-change: S118L
codon-change: TCA-TTA
gene: ORF1ab
one-based-reference-position: 11325
predicted-effect: non-synonymous
protein: nsp6
protein-codon-position: 118
reference-base: C
type: SNP
variant-base: T
- amino-acid-change: D105Y
codon-change: GAC-TAC
gene: ORF1ab
one-based-reference-position: 16549
predicted-effect: non-synonymous
protein: nsp13
protein-codon-position: 105
reference-base: G
type: SNP
variant-base: T
- gene: S
one-based-reference-position: 21764
protein: surface glycoprotein
reference-base: ATACATG
type: deletion
variant-base: A
- amino-acid-change: S12F
codon-change: TCT-TTT
gene: S
one-based-reference-position: 21597
predicted-effect: non-synonymous
protein: surface glycoprotein
protein-codon-position: 12
reference-base: C
type: SNP
variant-base: T
- amino-acid-change: W152R
codon-change: TGG-AGG
gene: S
one-based-reference-position: 22016
predicted-effect: non-synonymous
protein: surface glycoprotein
protein-codon-position: 152
reference-base: T
type: SNP
variant-base: A
- amino-acid-change: R346S
codon-change: AGA-AGC
gene: S
one-based-reference-position: 22600
predicted-effect: non-synonymous
protein: surface glycoprotein
protein-codon-position: 346
reference-base: A
type: SNP
variant-base: C
- amino-acid-change: L452R
codon-change: CTG-CGG
gene: S
one-based-reference-position: 22917
predicted-effect: non-synonymous
protein: surface glycoprotein
protein-codon-position: 452
reference-base: T
type: SNP
variant-base: G
- amino-acid-change: Q677H
codon-change: CAG-CAT
gene: S
one-based-reference-position: 23593
predicted-effect: non-synonymous
protein: surface glycoprotein
protein-codon-position: 677
reference-base: G
type: SNP
variant-base: T
- amino-acid-change: A899S
codon-change: GCT-TCT
gene: S
one-based-reference-position: 24257
predicted-effect: non-synonymous
protein: surface glycoprotein
protein-codon-position: 899
reference-base: G
type: SNP
variant-base: T
- amino-acid-change: I82T
codon-change: ATC-ACC
gene: M
one-based-reference-position: 26767
predicted-effect: non-synonymous
protein: membrane glycoprotein
protein-codon-position: 82
reference-base: T
type: SNP
variant-base: C
calling-definition:
confirmed:
mutations-required: 10
indels-required: 0
allowed-wildtype: 0
probable:
mutations-required: 6
indels-required: 0
allowed-wildtype: 0
low-qc:
mutations-required: 0
indels-required: 0
allowed-wildtype: 0
acknowledgements:
curators:
- Natalie Groves