-
404
-
-
Page not found :(
-
The requested page could not be found.
-
diff --git a/docs/Gemfile b/docs/Gemfile
deleted file mode 100644
index 03bd780..0000000
--- a/docs/Gemfile
+++ /dev/null
@@ -1,35 +0,0 @@
-source "https://rubygems.org"
-# Hello! This is where you manage which Jekyll version is used to run.
-# When you want to use a different version, change it below, save the
-# file and run `bundle install`. Run Jekyll with `bundle exec`, like so:
-#
-# bundle exec jekyll serve
-#
-# This will help ensure the proper Jekyll version is running.
-# Happy Jekylling!
-# gem "jekyll", "~> 4.2.2"
-# This is the default theme for new Jekyll sites. You may change this to anything you like.
-gem "just-the-docs"
-# If you want to use GitHub Pages, remove the "gem "jekyll"" above and
-# uncomment the line below. To upgrade, run `bundle update github-pages`.
-gem "github-pages", "~> 226", group: :jekyll_plugins
-# If you have any plugins, put them here!
-group :jekyll_plugins do
- gem "jekyll-feed", "~> 0.12"
-end
-
-# Windows and JRuby does not include zoneinfo files, so bundle the tzinfo-data gem
-# and associated library.
-platforms :mingw, :x64_mingw, :mswin, :jruby do
- gem "tzinfo", "~> 1.2"
- gem "tzinfo-data"
-end
-
-# Performance-booster for watching directories on Windows
-gem "wdm", "~> 0.1.1", :platforms => [:mingw, :x64_mingw, :mswin]
-
-# Lock `http_parser.rb` gem to `v0.6.x` on JRuby builds since newer versions of the gem
-# do not have a Java counterpart.
-gem "http_parser.rb", "~> 0.6.0", :platforms => [:jruby]
-
-gem "webrick", "~> 1.7"
diff --git a/docs/Gemfile.lock b/docs/Gemfile.lock
deleted file mode 100644
index d9c8363..0000000
--- a/docs/Gemfile.lock
+++ /dev/null
@@ -1,277 +0,0 @@
-GEM
- remote: https://rubygems.org/
- specs:
- activesupport (6.0.5)
- concurrent-ruby (~> 1.0, >= 1.0.2)
- i18n (>= 0.7, < 2)
- minitest (~> 5.1)
- tzinfo (~> 1.1)
- zeitwerk (~> 2.2, >= 2.2.2)
- addressable (2.8.0)
- public_suffix (>= 2.0.2, < 5.0)
- coffee-script (2.4.1)
- coffee-script-source
- execjs
- coffee-script-source (1.11.1)
- colorator (1.1.0)
- commonmarker (0.23.5)
- concurrent-ruby (1.1.10)
- dnsruby (1.61.9)
- simpleidn (~> 0.1)
- em-websocket (0.5.3)
- eventmachine (>= 0.12.9)
- http_parser.rb (~> 0)
- ethon (0.15.0)
- ffi (>= 1.15.0)
- eventmachine (1.2.7)
- execjs (2.8.1)
- faraday (2.3.0)
- faraday-net_http (~> 2.0)
- ruby2_keywords (>= 0.0.4)
- faraday-net_http (2.0.3)
- ffi (1.15.5-x64-mingw-ucrt)
- forwardable-extended (2.6.0)
- gemoji (3.0.1)
- github-pages (226)
- github-pages-health-check (= 1.17.9)
- jekyll (= 3.9.2)
- jekyll-avatar (= 0.7.0)
- jekyll-coffeescript (= 1.1.1)
- jekyll-commonmark-ghpages (= 0.2.0)
- jekyll-default-layout (= 0.1.4)
- jekyll-feed (= 0.15.1)
- jekyll-gist (= 1.5.0)
- jekyll-github-metadata (= 2.13.0)
- jekyll-include-cache (= 0.2.1)
- jekyll-mentions (= 1.6.0)
- jekyll-optional-front-matter (= 0.3.2)
- jekyll-paginate (= 1.1.0)
- jekyll-readme-index (= 0.3.0)
- jekyll-redirect-from (= 0.16.0)
- jekyll-relative-links (= 0.6.1)
- jekyll-remote-theme (= 0.4.3)
- jekyll-sass-converter (= 1.5.2)
- jekyll-seo-tag (= 2.8.0)
- jekyll-sitemap (= 1.4.0)
- jekyll-swiss (= 1.0.0)
- jekyll-theme-architect (= 0.2.0)
- jekyll-theme-cayman (= 0.2.0)
- jekyll-theme-dinky (= 0.2.0)
- jekyll-theme-hacker (= 0.2.0)
- jekyll-theme-leap-day (= 0.2.0)
- jekyll-theme-merlot (= 0.2.0)
- jekyll-theme-midnight (= 0.2.0)
- jekyll-theme-minimal (= 0.2.0)
- jekyll-theme-modernist (= 0.2.0)
- jekyll-theme-primer (= 0.6.0)
- jekyll-theme-slate (= 0.2.0)
- jekyll-theme-tactile (= 0.2.0)
- jekyll-theme-time-machine (= 0.2.0)
- jekyll-titles-from-headings (= 0.5.3)
- jemoji (= 0.12.0)
- kramdown (= 2.3.2)
- kramdown-parser-gfm (= 1.1.0)
- liquid (= 4.0.3)
- mercenary (~> 0.3)
- minima (= 2.5.1)
- nokogiri (>= 1.13.4, < 2.0)
- rouge (= 3.26.0)
- terminal-table (~> 1.4)
- github-pages-health-check (1.17.9)
- addressable (~> 2.3)
- dnsruby (~> 1.60)
- octokit (~> 4.0)
- public_suffix (>= 3.0, < 5.0)
- typhoeus (~> 1.3)
- html-pipeline (2.14.2)
- activesupport (>= 2)
- nokogiri (>= 1.4)
- http_parser.rb (0.8.0)
- i18n (0.9.5)
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- jekyll (3.9.2)
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- colorator (~> 1.0)
- em-websocket (~> 0.5)
- i18n (~> 0.7)
- jekyll-sass-converter (~> 1.0)
- jekyll-watch (~> 2.0)
- kramdown (>= 1.17, < 3)
- liquid (~> 4.0)
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- pathutil (~> 0.9)
- rouge (>= 1.7, < 4)
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- jekyll-avatar (0.7.0)
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- coffee-script (~> 2.2)
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- jekyll (> 3.5, < 5.0)
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- jekyll (> 3.5, < 5.0)
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- jekyll-theme-leap-day (0.2.0)
- jekyll (> 3.5, < 5.0)
- jekyll-seo-tag (~> 2.0)
- jekyll-theme-merlot (0.2.0)
- jekyll (> 3.5, < 5.0)
- jekyll-seo-tag (~> 2.0)
- jekyll-theme-midnight (0.2.0)
- jekyll (> 3.5, < 5.0)
- jekyll-seo-tag (~> 2.0)
- jekyll-theme-minimal (0.2.0)
- jekyll (> 3.5, < 5.0)
- jekyll-seo-tag (~> 2.0)
- jekyll-theme-modernist (0.2.0)
- jekyll (> 3.5, < 5.0)
- jekyll-seo-tag (~> 2.0)
- jekyll-theme-primer (0.6.0)
- jekyll (> 3.5, < 5.0)
- jekyll-github-metadata (~> 2.9)
- jekyll-seo-tag (~> 2.0)
- jekyll-theme-slate (0.2.0)
- jekyll (> 3.5, < 5.0)
- jekyll-seo-tag (~> 2.0)
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- jekyll (> 3.5, < 5.0)
- jekyll-seo-tag (~> 2.0)
- jekyll-theme-time-machine (0.2.0)
- jekyll (> 3.5, < 5.0)
- jekyll-seo-tag (~> 2.0)
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- listen (~> 3.0)
- jemoji (0.12.0)
- gemoji (~> 3.0)
- html-pipeline (~> 2.2)
- jekyll (>= 3.0, < 5.0)
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- jekyll (>= 3.8.5)
- jekyll-seo-tag (~> 2.0)
- rake (>= 12.3.1, < 13.1.0)
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- rexml
- kramdown-parser-gfm (1.1.0)
- kramdown (~> 2.0)
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- ffi (~> 1.0)
- rexml (3.2.5)
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- ruby2_keywords (0.0.5)
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- sass-listen (4.0.0)
- rb-fsevent (~> 0.9, >= 0.9.4)
- rb-inotify (~> 0.9, >= 0.9.7)
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- unicode-display_width (~> 1.1, >= 1.1.1)
- thread_safe (0.3.6)
- typhoeus (1.4.0)
- ethon (>= 0.9.0)
- tzinfo (1.2.9)
- thread_safe (~> 0.1)
- tzinfo-data (1.2022.1)
- tzinfo (>= 1.0.0)
- unf (0.1.4)
- unf_ext
- unf_ext (0.0.8.2-x64-mingw-ucrt)
- unicode-display_width (1.8.0)
- wdm (0.1.1)
- webrick (1.7.0)
- zeitwerk (2.6.0)
-
-PLATFORMS
- x64-mingw-ucrt
-
-DEPENDENCIES
- github-pages (~> 226)
- http_parser.rb (~> 0.6.0)
- jekyll-feed (~> 0.12)
- just-the-docs
- tzinfo (~> 1.2)
- tzinfo-data
- wdm (~> 0.1.1)
- webrick (~> 1.7)
-
-BUNDLED WITH
- 2.3.17
diff --git a/docs/_config.yml b/docs/_config.yml
deleted file mode 100644
index 728d563..0000000
--- a/docs/_config.yml
+++ /dev/null
@@ -1,59 +0,0 @@
-# Welcome to Jekyll!
-#
-# This config file is meant for settings that affect your whole blog, values
-# which you are expected to set up once and rarely edit after that. If you find
-# yourself editing this file very often, consider using Jekyll's data files
-# feature for the data you need to update frequently.
-#
-# For technical reasons, this file is *NOT* reloaded automatically when you use
-# 'bundle exec jekyll serve'. If you change this file, please restart the server process.
-#
-# If you need help with YAML syntax, here are some quick references for you:
-# https://learn-the-web.algonquindesign.ca/topics/markdown-yaml-cheat-sheet/#yaml
-# https://learnxinyminutes.com/docs/yaml/
-#
-# Site settings
-# These are used to personalize your new site. If you look in the HTML files,
-# you will see them accessed via {{ site.title }}, {{ site.email }}, and so on.
-# You can create any custom variable you would like, and they will be accessible
-# in the templates via {{ site.myvariable }}.
-
-title: "PyMigBench"
-email: mohayemin@ualberta.ca
-description: >- # this means to ignore newlines until "baseurl:"
- Write an awesome description for your new site here. You can edit this
- line in _config.yml. It will appear in your document head meta (for
- Google search results) and in your feed.xml site description.
-baseurl: "/PyMigBench" # the subpath of your site, e.g. /blog
-url: "" # the base hostname & protocol for your site, e.g. http://example.com
-
-# Build settings
-remote_theme: "just-the-docs/just-the-docs"
-aux_links:
- "Repository":
- - "https://github.com/ualberta-smr/PyMigBench/"
-aux_links_new_tab: true
-vars: # custom variables
- repo: "https://github.com/ualberta-smr/PyMigBench/"
-plugins:
- - jekyll-feed
-
-# Exclude from processing.
-# The following items will not be processed, by default.
-# Any item listed under the `exclude:` key here will be automatically added to
-# the internal "default list".
-#
-# Excluded items can be processed by explicitly listing the directories or
-# their entries' file path in the `include:` list.
-#
-# exclude:
-# - .sass-cache/
-# - .jekyll-cache/
-# - gemfiles/
-# - Gemfile
-# - Gemfile.lock
-# - node_modules/
-# - vendor/bundle/
-# - vendor/cache/
-# - vendor/gems/
-# - vendor/ruby/
diff --git a/docs/dataset.md b/docs/dataset.md
deleted file mode 100644
index 92f399e..0000000
--- a/docs/dataset.md
+++ /dev/null
@@ -1,132 +0,0 @@
----
-nav_order: 1
----
-# PyMigBench dataset
-The PyMigBench dataset is in the [data]({{ site.vars.repo }}/tree/msr-2023-datatrack/data){:target="_blank"} directory.
-There are two types of data: analogous library pairs and valid migrations located in `libpair` and `migration` subdirectories respectively.
-Each YAML file in the `libpair` and `migration` folders contain information about one data item.
-Additionally, the `codefile` subdirectory has the diff files of the code changes, and the code files before and after migration.
-
-## Library pair
-* Location: [data/libpair]({{ site.vars.repo }}/tree/msr-2023-datatrack/data/libpair){:target="_blank"}
-
-
-### Schema
-- `id`: unique ID of the library pair
-- `source`: the source library
-- `target`: the target library
-- `domain`: the domain of the library pair
-
-### Sample data file
-Analogous library pair from flask to quart: [flask,quart.yaml]({{ site.vars.repo }}/blob/msr-2023-datatrack/data/libpair/flask,quart.yaml){:target="_blank"}
-```yaml
-id: flask,quart
-source: flask
-target: quart
-domain: Development framework/extension
-```
-
-## Migration
-* Location: [data/migration]({{ site.vars.repo }}/tree/msr-2023-datatrack/data/migration){:target="_blank"}
-
-### Schema
-- `id`: unique ID of the migration
-- `source`: the source library
-- `target`: the target library
-- `repo`: the repository where the migration happened
-- `commit`: the hash of the commit where the migration happened
-- `pair_id`: the ID of the library pair in the migration
-- `commit_message` (type: multiline text): the commit message
-- `commit_url`: URL of the migration commit on GitHub
-- `code_changes` (type: list): the list of code changes found in this migration.
- - `filepath`: the file where the code was changed
- - `lines`: a list of range of line numbers where the code was changed for migration.
-
-### Sample data file
-Migration from flask to quart at commit 0a70f2b: [0a70f2b_flask,quart.yaml]({{ site.vars.repo }}/blob/main/data/migration/0a70f2b_flask,quart.yaml){:target="_blank"}
-```yaml
-id: 0a70f2b_flask,quart
-source: flask
-target: quart
-repo: pgjones/faster_than_flask_article
-commit: 0a70f2bddae90da13da5bce2b77ea56355ecc5d1
-pair_id: flask,quart
-commit_message: Quart version
-commit_url: https://github.com/pgjones/faster_than_flask_article/commit/0a70f2bd
-code_changes:
-- filepath: app/films.py
- lines:
- - '1:1'
-- filepath: app/run.py
- lines:
- - '4:5'
- - '35:12'
-- filepath: app/reviews.py
- lines:
- - '1:1'
- - '8:8'
-
-```
-
-### Sample diff file
-The below diff file shows the changes in the `app/run.py` in the migration mentioned above: [pgjones@faster_than_flask_article__0a70f2b__app$run.py.diff]({{ site.vars.repo }}/blob/main/data/codefile/pgjones@faster_than_flask_article__0a70f2b__app$run.py.diff).
-The diff file file name formate is: `{repouser}@{reponame}__{8_characters_commit_hash}__{filepath-in-repo}.diff`.
-The slash (`/`) or backslash (`\`) in the file path is replaced with a dollar (`$`) sign.
-
-```diff
-diff --git a/app/run.py b/app/run.py
- index 253538aa8cd65a3ed48563c2ea4594d998286293..0a70f2bddae90da13da5bce2b77ea56355ecc5d1 100644
- --- a/app/run.py
- +++ b/app/run.py
-@@ -1,44 +1,21 @@
- import os
- from contextlib import contextmanager
-
--from flask import Flask
--from psycopg2.extras import RealDictCursor
--from psycopg2.pool import ThreadedConnectionPool
-+import asyncpg
-+from quart import Quart
-
- from films import blueprint as films_blueprint
- from reviews import blueprint as reviews_blueprint
-
-
--class PoolWrapper:
-- """Exists to provide an acquire method for easy usage.
--
-- pool = PoolWrapper(...)
-- with pool.acquire() as conneciton:
-- connection.execute(...)
-- """
--
-- def __init__(self, max_pool_size: int, *, dsn):
-- self._pool = ThreadedConnectionPool(
-- 1, max_pool_size, dsn=dsn, cursor_factory=RealDictCursor,
-- )
--
-- @contextmanager
-- def acquire(self):
-- try:
-- connection = self._pool.getconn()
-- yield connection
-- finally:
-- self._pool.putconn(connection)
--
--
- def create_app():
-- app = Flask(__name__)
-+ app = Quart(__name__)
- app.config['JSONIFY_PRETTYPRINT_REGULAR'] = False
-
- @app.before_first_request
-- def create_db():
-- dsn = 'host=0.0.0.0 port=5432 dbname=dvdrental user=dvdrental password=dvdrental'
-- app.pool = PoolWrapper(20, dsn=dsn) #os.environ['DB_DSN'])
-+ async def create_db():
-+ dsn = 'postgres://dvdrental:dvdrental@0.0.0.0:5432/dvdrental'
-+ app.pool = await asyncpg.create_pool(dsn, max_size=20) #os.environ['DB_DSN'])
-
- app.register_blueprint(films_blueprint)
- app.register_blueprint(reviews_blueprint)
-```
diff --git a/docs/examples.md b/docs/examples.md
deleted file mode 100644
index 8bd5498..0000000
--- a/docs/examples.md
+++ /dev/null
@@ -1,186 +0,0 @@
----
-nav_order: 3
----
-# PyMigBench query examples
-{: .no_toc }
-Below are some use cases of the tool and the expected output.
-- TOC
-{:toc}
-
-## Get a summary of the benchmark
-**Command:**
-```bash
-python pymigbench.py summary
-```
-`summary` is the default query and does not accept any data type or filters. Therefore the above command is equivalent to the one below.
-```bash
-python pymigbench.py
-```
-
-**Result:**
-```yaml
-- analogous library pairs: 59
- unique libraries: 99
- unique source libraries: 55
- unique target libraries: 56
- unique library domains: 13
- migrations: 157
- client repositories having migrations: 127
- library pairs having migrations: 49
- migration commits: 155
- migrations having code changes: 75
- library pairs having code changes: 34
- client repositories having code changes: 57
- commits having code changes: 74
- modified files: 161
- modified code segments: 375
-```
-## Get count of _lib pairs_ in `File reader/writer` domain
-**Command:**
-```bash
-python pymigbench.py count -dt lp -f domain="File reader/writer"
-```
-
-**Result:**
-```
-6 items
-```
-## List IDs of all _migrations_
-**Command:**
-```bash
-python pymigbench.py list -dt mg
-```
-
-**Result:**
-```yaml
-157 items
-- 002f5bd_flask,quart
-- 0171fb9_pil,pillow
-- 02b064b_pycryptodome,pycryptodomex
-# (151 items hidden for brevity)
-- f970b54_pil,pillow
-- fe6b437_pil,pillow
-- fe8e65d_dotenv,python-dotenv
-157 items
-```
-
-## List IDs of _migrations_ to target library _aiohttp_
-**Command:**
-```bash
-python pymigbench.py list -dt mg -f target=aiohttp
-```
-
-**Result:**
-```yaml
-11 items
-- 1c574c1_requests,aiohttp
-- 1d8923a_requests,aiohttp
-- 45d94dd_gcloud-aio-core,aiohttp
-- 53f2073_requests,aiohttp
-- 6e7ee63_requests,aiohttp
-- 963f347_gcloud-aio-core,aiohttp
-- a5c04bb_requests,aiohttp
-- ab4e5fd_requests,aiohttp
-- b2c9313_requests,aiohttp
-- d15540f_gcloud-aio-core,aiohttp
-- d3a9a16_requests,aiohttp
-11 items
-```
-
-## Show details of _migrations_ from _ruamel.yaml_ to _pyyaml_ in JSON format
-**Command:**
-```bash
-python pymigbench.py detail -dt mg -f source=ruamel.yaml target=pyyaml -o json
-```
-**Result:**
-```json
-2 items
-[
- {
- "id": "12e3e80_ruamel.yaml,pyyaml",
- "source": "ruamel.yaml",
- "target": "pyyaml",
- "repo": "cloud-custodian/cloud-custodian",
- "commit": "12e3e8084ddb2e7f5ccbc5ea3c3bd3e4c7e9c207",
- "pair_id": "ruamel.yaml,pyyaml",
- "commit_message": "tools/c7n_mailer - switch ruamel dependency to pyyaml (#5521)",
- "commit_url": "https://github.com/cloud-custodian/cloud-custodian/commit/12e3e808",
- "code_changes": [
- {
- "filepath": "tools/c7n_mailer/c7n_mailer/replay.py",
- "lines": [
- "25:18"
- ]
- },
- {
- "filepath": "tools/c7n_mailer/c7n_mailer/utils.py",
- "lines": [
- "28:22"
- ]
- },
- {
- "filepath": "tools/c7n_mailer/c7n_mailer/cli.py",
- "lines": [
- "15:10"
- ]
- }
- ]
- },
- {
- "id": "b955ac9_ruamel.yaml,pyyaml",
- "source": "ruamel.yaml",
- "target": "pyyaml",
- "repo": "microsoft/nni",
- "commit": "b955ac99a46094d2d701d447e9df07509767cc32",
- "pair_id": "ruamel.yaml,pyyaml",
- "commit_message": "Use PyYAML instead of ruamel.yaml (#3702)",
- "commit_url": "https://github.com/microsoft/nni/commit/b955ac99",
- "code_changes": [
- {
- "filepath": "nni/tools/nnictl/common_utils.py",
- "lines": [
- "12:12"
- ]
- },
- {
- "filepath": "test/nni_test/nnitest/utils.py",
- "lines": [
- "12:12",
- "46:46",
- "51:51"
- ]
- },
- {
- "filepath": "nni/experiment/config/common.py",
- "lines": [
- "8:8",
- "121:121"
- ]
- },
- {
- "filepath": "test/nni_test/nnitest/run_tests.py",
- "lines": [
- "12:12",
- "83:83"
- ]
- },
- {
- "filepath": "nni/experiment/config/base.py",
- "lines": [
- "9:9",
- "75:75"
- ]
- },
- {
- "filepath": "nni/tools/package_utils/__init__.py",
- "lines": [
- "9:9",
- "218:218",
- "229:229"
- ]
- }
- ]
- }
-]
-2 items
-```
\ No newline at end of file
diff --git a/docs/img/img-construction.svg b/docs/img/img-construction.svg
deleted file mode 100644
index 83fde89..0000000
--- a/docs/img/img-construction.svg
+++ /dev/null
@@ -1 +0,0 @@
-