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environment.yml
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environment.yml
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name: protrem
channels:
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/
- https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- ca-certificates=2024.9.24=h06a4308_0
- ld_impl_linux-64=2.40=h12ee557_0
- libffi=3.4.4=h6a678d5_1
- libgcc-ng=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libstdcxx-ng=11.2.0=h1234567_1
- ncurses=6.4=h6a678d5_0
- openssl=3.0.15=h5eee18b_0
- pip=24.2=py39h06a4308_0
- python=3.9.20=he870216_1
- readline=8.2=h5eee18b_0
- setuptools=75.1.0=py39h06a4308_0
- sqlite=3.45.3=h5eee18b_0
- tk=8.6.14=h39e8969_0
- wheel=0.44.0=py39h06a4308_0
- xz=5.4.6=h5eee18b_1
- zlib=1.2.13=h5eee18b_1
- pip:
- aiohappyeyeballs==2.4.3
- aiohttp==3.10.10
- aiosignal==1.3.1
- async-timeout==4.0.3
- attrs==24.2.0
- billiard==4.2.1
- bio==1.6.2
- biopython==1.84
- biothings-client==0.3.1
- biotite==0.40.0
- bokeh==3.4.3
- certifi==2024.8.30
- charset-normalizer==3.4.0
- click==8.1.7
- contourpy==1.3.0
- cycler==0.12.1
- dill==0.3.9
- evcouplings==0.2.1
- filelock==3.13.1
- fonttools==4.54.1
- frozenlist==1.5.0
- fsspec==2024.2.0
- gprofiler-official==1.0.0
- hmmer==3.4.0.0
- huggingface-hub==0.26.2
- idna==3.10
- importlib-resources==6.4.5
- jinja2==3.1.3
- joblib==1.4.2
- kiwisolver==1.4.7
- llvmlite==0.43.0
- markupsafe==2.1.5
- matplotlib==3.9.2
- mpmath==1.3.0
- msgpack==1.1.0
- multidict==6.1.0
- multiprocess==0.70.17
- mygene==3.2.2
- networkx==3.2.1
- numba==0.60.0
- numpy==1.26.3
- nvidia-cublas-cu12==12.1.3.1
- nvidia-cuda-cupti-cu12==12.1.105
- nvidia-cuda-nvrtc-cu12==12.1.105
- nvidia-cuda-runtime-cu12==12.1.105
- nvidia-cudnn-cu12==9.1.0.70
- nvidia-cufft-cu12==11.0.2.54
- nvidia-curand-cu12==10.3.2.106
- nvidia-cusolver-cu12==11.4.5.107
- nvidia-cusparse-cu12==12.1.0.106
- nvidia-nccl-cu12==2.21.5
- nvidia-nvjitlink-cu12==12.1.105
- nvidia-nvtx-cu12==12.1.105
- packaging==24.2
- pandas==2.2.3
- pathos==0.3.3
- pillow==10.2.0
- platformdirs==4.3.6
- pooch==1.8.2
- pox==0.3.5
- ppft==1.7.6.9
- propcache==0.2.0
- psutil==6.1.0
- pyg-lib==0.4.0+pt25cu121
- pyparsing==3.2.0
- python-dateutil==2.9.0.post0
- pytz==2024.2
- pyyaml==6.0.2
- regex==2024.11.6
- requests==2.32.3
- ruamel-yaml==0.17.40
- ruamel-yaml-clib==0.2.12
- safetensors==0.4.5
- scikit-learn==1.5.2
- scipy==1.13.1
- seaborn==0.13.2
- six==1.16.0
- sympy==1.13.1
- threadpoolctl==3.5.0
- tokenizers==0.20.3
- torch==2.5.1+cu121
- torch-cluster==1.6.3+pt25cu121
- torch-geometric==2.6.1
- torch-scatter==2.1.2+pt25cu121
- torch-sparse==0.6.18+pt25cu121
- torch-spline-conv==1.2.2+pt25cu121
- torchaudio==2.5.1+cu121
- torchvision==0.20.1+cu121
- tornado==6.4.1
- tqdm==4.67.0
- transformers==4.46.2
- triton==3.1.0
- typing-extensions==4.9.0
- tzdata==2024.2
- urllib3==2.2.3
- xyzservices==2024.9.0
- yarl==1.17.1
- zipp==3.21.0
prefix: /home/tanyang/miniconda3/envs/protrem