diff --git a/docs/outputs.rst b/docs/outputs.rst index 70a4df0c9..e9459bd41 100644 --- a/docs/outputs.rst +++ b/docs/outputs.rst @@ -18,7 +18,7 @@ The *XCP-D* outputs are written out in BIDS format and consist of three main pa `BEP012: Functional preprocessing derivatives `_, `BEP017: BIDS connectivity matrix data schema `_, and - `BEPXXX: Atlas Specification `_ + `BEP038: Atlas Specification `_ (currently unnumbered). In cases where a derivative type is not covered by an existing BEP, @@ -72,6 +72,22 @@ The 4S atlas is used in the same manner across three PennLINC BIDS Apps: XCP-D, QSIPrep_, and ASLPrep_, to produce synchronized outputs across modalities. For more information about the 4S atlas, please see https://github.com/PennLINC/AtlasPack. +Atlases are written out to the ``atlases`` subfolder, following BEP038. + +.. code-block:: + + xcp_d/ + atlases/ + atlas-